Added appropriate exception catching for SBML errors when exproting to SEDML.#937

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CodeByDrescher wants to merge 29 commits intomasterfrom ExportExceptionFixesForRoundTrip

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Commits on Oct 2, 2023

Added appropriate exception catching for SBML errors when exproting to SEDML.

CodeByDrescher
authored and
jcschaff
committed
Patched unnecessary throw statement

CodeByDrescher
authored and
jcschaff
committed
Changed Exception to SEDMLExportException

CodeByDrescher
authored and
jcschaff
committed
Added clearer exception catching, and small tweaks

CodeByDrescher
authored and
jcschaff
committed
Adding missing exception infrastructure

CodeByDrescher
authored and
jcschaff
committed
Added new exception for non-error raising failures

CodeByDrescher
authored and
jcschaff
committed
Cleaning commit

CodeByDrescher
authored and
jcschaff
committed
Added handling for mapping exception

CodeByDrescher
authored and
jcschaff
committed
expanded unsupported sbml exceptions

CodeByDrescher
authored and
jcschaff
committed
Added cbit's XMLParseException exception handling

CodeByDrescher
authored and
jcschaff
committed
Added NumberFormatException exception handling

CodeByDrescher
authored and
jcschaff
committed
Testing state in GitHub Action

CodeByDrescher
authored and
jcschaff
committed
Fixed bug with OmexPythonUtils

CodeByDrescher
authored and
jcschaff
committed
Added system property to MathOverrideRoundTipTest

CodeByDrescher
authored and
jcschaff
committed
Testing using install dir as reference

CodeByDrescher
authored and
jcschaff
committed
Second attempt at a fix

CodeByDrescher
authored and
jcschaff
committed
Used canonical file to fix pathing

CodeByDrescher
authored and
jcschaff
committed
Cleaned up Batch mode, still a bug with Export calls

CodeByDrescher
authored and
jcschaff
committed
Reverted some changes to get working result

CodeByDrescher
authored and
jcschaff
committed
Added more needed property updates

CodeByDrescher
authored and
jcschaff
committed
removed debug session

CodeByDrescher
authored and
jcschaff
committed
Needing to check debug again

CodeByDrescher
authored and
jcschaff
committed
Removed tmate check, and added code to restore joblob.txt

CodeByDrescher
authored and
jcschaff
committed
Fixed Workflow to not create already existing directory, and to print jobLog.txt

CodeByDrescher
authored and
jcschaff
committed
Fixed path to processed export results

CodeByDrescher
authored and
jcschaff
committed
Added new test and correlated helper classes; need to test prototype and confirm everything's working.

CodeByDrescher
authored and
jcschaff
committed
Fleshed out new tests, and changed github action to use test

CodeByDrescher
authored and
jcschaff
committed
Fixed mkdirs

CodeByDrescher
authored and
jcschaff
committed
Removed skipping tests

CodeByDrescher
authored and
jcschaff
committed

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Added appropriate exception catching for SBML errors when exproting to SEDML.#937

Commits on Oct 2, 2023

Added appropriate exception catching for SBML errors when exproting to SEDML.

Patched unnecessary throw statement

Changed Exception to SEDMLExportException

Added clearer exception catching, and small tweaks

Adding missing exception infrastructure

Added new exception for non-error raising failures

Cleaning commit

Added handling for mapping exception

expanded unsupported sbml exceptions

Added cbit's XMLParseException exception handling

Added NumberFormatException exception handling

Testing state in GitHub Action

Fixed bug with OmexPythonUtils

Added system property to MathOverrideRoundTipTest

Testing using install dir as reference

Second attempt at a fix

Used canonical file to fix pathing

Cleaned up Batch mode, still a bug with Export calls

Reverted some changes to get working result

Added more needed property updates

removed debug session

Needing to check debug again

Removed tmate check, and added code to restore joblob.txt

Fixed Workflow to not create already existing directory, and to print jobLog.txt

Fixed path to processed export results

Added new test and correlated helper classes; need to test prototype and confirm everything's working.

Fleshed out new tests, and changed github action to use test

Fixed mkdirs

Removed skipping tests