Issues

• Make short read Giraffe as good as DRAGEN

  vgteam/vg#5092 · Filter by author adamnovak opened on Nov 2, 2026

• Remove non-chaining Giraffe codepath

  vgteam/vg#5091 · Filter by author adamnovak opened on Nov 2, 2026

• Add paired-end support to the Giraffe chaining codepath

  vgteam/vg#5090 · Filter by author adamnovak opened on Nov 2, 2026

• Ultimate Giraffe Epic

  epic
  vgteam/vg#5089 · Filter by author adamnovak opened on Nov 2, 2026

• Drop Cactus-library-based snarl finder, pinchesAndCacti, and sonLib

  vgteam/vg#5088 · Filter by author adamnovak opened on Nov 2, 2026

• Indel Realignment Epic

  epic
  vgteam/vg#5087 · Filter by author adamnovak opened on Nov 2, 2026

• Supplementary Alignment Epic

  epic
  vgteam/vg#5086 · Filter by author adamnovak opened on Nov 2, 2026

• Pull edit snarl decomposition overlay abstractions out of artifacts directory

  vgteam/vg#5085 · Filter by author adamnovak opened on Nov 2, 2026

• Check all writes for errors

  vgteam/vg#5084 · Filter by author adamnovak opened on Nov 2, 2026

• Homopolymers in haplotype sampling

  vgteam/vg#5081 · Filter by author jltsiren opened on Oct 29, 2026

• Unlicensed sublinear-Li-Stephens dependency blocks packaging and redistribution

  vgteam/vg#5077 · Filter by author tillea opened on Oct 27, 2026

• FASTA incompatibility reported by kmc in vg giraffe.

  vgteam/vg#5076 · Filter by author samarendra-pani opened on Oct 26, 2026

• Release vg v1.79.0

  vgteam/vg#5071 · Filter by author parsaeskandar opened on Oct 19, 2026 · v1.79.0

• Improve haplotype sampling accuracy

  vgteam/vg#5070 · Filter by author jltsiren opened on Oct 19, 2026
  2

• Take advantage of biological knowledge in haplotype sampling

  vgteam/vg#5069 · Filter by author jltsiren opened on Oct 19, 2026

• Haplotype Sampling Epic

  epic
  vgteam/vg#5067 · Filter by author jltsiren opened on Oct 19, 2026

• How to extract supporting read names for each genotyped SV site from vg call (v1.77.0)?

  vgteam/vg#5066 · Filter by author biozzq opened on Oct 18, 2026
  5

• Usability Epic

  epic
  vgteam/vg#5065 · Filter by author adamnovak opened on Oct 16, 2026

• Putting generic paths in a GBZ into a reference sample is weirdly hard

  vgteam/vg#5064 · Filter by author adamnovak opened on Oct 16, 2026

• Genome Browser Intergration

  epic
  vgteam/vg#5043 · Filter by author parsaeskandar opened on Sep 21, 2026
  

• Remove vg viz

  epic
  vgteam/vg#5040 · Filter by author faithokamoto opened on Sep 17, 2026
  2

  

• Genome Inference Epic

  epic
  vgteam/vg#5036 · Filter by author adamnovak opened on Sep 15, 2026
  1

• Pangenome Building Refinement Epic

  epic
  vgteam/vg#5035 · Filter by author adamnovak opened on Sep 15, 2026

• Purge .vg Epic

  epic
  vgteam/vg#5034 · Filter by author adamnovak opened on Sep 15, 2026

• Giraffe with extra threads is slower with a read-only distance index on a specific graph on a specific cluster

  vgteam/vg#5017 · Filter by author xchang1 opened on Aug 19, 2026
  4