Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
updating benchmarking protocol DOI
  • Loading branch information
EngyNasr authored Nov 14, 2024
1 parent 12bf842 commit e17f69c
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -61,7 +61,7 @@ The [Galaxy history](https://usegalaxy.eu/u/engy.nasr/h/biolytix-datasets-analys

## Benchmarking PathoGFAIR: Replication Guide

This section provides detailed instructions on replicating the PathoGFAIR benchmarking process, as outlined in our PathoGFAIR Benchmarking protocol on [protocols.io](dx.doi.org/10.17504/protocols.io.e6nvwbp4zvmk/v1). The focus here is on running the selected systems/pipelines used in our benchmarking.
This section provides detailed instructions on replicating the PathoGFAIR benchmarking process, as outlined in our PathoGFAIR Benchmarking protocol on [protocols.io](https://dx.doi.org/10.17504/protocols.io.e6nvwbp4zvmk/v1). The focus here is on running the selected systems/pipelines used in our benchmarking.

### PathoGFAIR

Expand Down Expand Up @@ -116,7 +116,7 @@ This section provides detailed instructions on replicating the PathoGFAIR benchm

### Conclusion

By following these steps, you can replicate our benchmarking process and assess the performance of each system in detecting and identifying pathogens from metagenomic data. For additional details, refer to our published protocol on [protocols.io](dx.doi.org/10.17504/protocols.io.e6nvwbp4zvmk/v1) or explore the respective systems via the links provided in [`data/benchmark`](https://github.com/usegalaxy-eu/PathoGFAIR/blob/main/data/benchmark/PathoGFAIR_benchmark_systems_tools_or_pipelines.tsv).
By following these steps, you can replicate our benchmarking process and assess the performance of each system in detecting and identifying pathogens from metagenomic data. For additional details, refer to our published protocol on [protocols.io](https://dx.doi.org/10.17504/protocols.io.e6nvwbp4zvmk/v1) or explore the respective systems via the links provided in [`data/benchmark`](https://github.com/usegalaxy-eu/PathoGFAIR/blob/main/data/benchmark/PathoGFAIR_benchmark_systems_tools_or_pipelines.tsv).

## Contributors

Expand Down

0 comments on commit e17f69c

Please sign in to comment.