Edited torch/torchvision versions, restored ninja

Added the "cu111" back to the torch/torchvision versions.   Restored previously deleted ninja package.

Dockerfile

@@ -6,21 +6,21 @@ LABEL maintainer="UC San Diego ITS/ETS <[email protected]>"
 USER root
 
 
-#RUN apt-get -q update && \
-#  apt-get -qy install apt-utils  && \
-#  apt-get -qy dist-upgrade && \
-#  apt-get -qy auto-remove && \
-#  apt-get install -qy p7zip-full software-properties-common && \
-#  apt-get clean && \
-#  rm -rf /var/lib/apt/lists/*  && \
-#             https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-ubuntu2004.pin
-#RUN wget -nv https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-ubuntu2004.pin -O /etc/apt/preferences.d/cuda-repository-pin-600 && \
-#  apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/3bf863cc.pub && \
-#  wget https://developer.download.nvidia.com/compute/cuda/repos/$distro/$arch/cuda-keyring_1.0-1_all.deb && \
-#  dpkg -i cuda-keyring_1.0-1_all.deb && \
-#  add-apt-repository "deb http://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/ /" && \
-#  apt-get -q update && \
-#  apt-get install -qqy cuda-11-1 cuda-nvcc-11-1	cuda-toolkit-11-1 && \
+RUN apt-get -q update && \
+ apt-get -qy install apt-utils  && \
+ apt-get -qy dist-upgrade && \
+ apt-get -qy auto-remove && \
+ apt-get install -qy p7zip-full software-properties-common && \
+ apt-get clean && \
+ rm -rf /var/lib/apt/lists/*  && \
+            https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-ubuntu2004.pin
+RUN wget -nv https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-ubuntu2004.pin -O /etc/apt/preferences.d/cuda-repository-pin-600 && \
+ apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/3bf863cc.pub && \
+ wget https://developer.download.nvidia.com/compute/cuda/repos/$distro/$arch/cuda-keyring_1.0-1_all.deb && \
+ dpkg -i cuda-keyring_1.0-1_all.deb && \
+ add-apt-repository "deb http://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/ /" && \
+ apt-get -q update && \
+ apt-get install -qqy cuda-11-1 cuda-nvcc-11-1	cuda-toolkit-11-1 && \
 
 # install cuda toolkit 
 # https://developer.nvidia.com/cuda-11.1.0-download-archive?target_os=Linux&target_arch=x86_64&target_distro=Ubuntu&target_version=2004&target_type=debnetwork
@@ -38,9 +38,9 @@ RUN apt-get update && \
 #apt-get -y install cuda && \
     apt-get install -qqy cuda-11-1 cuda-nvcc-11-1	cuda-toolkit-11-1 && \
 
-#  wget -nv https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/libcudnn8_8.0.5.39-1+cuda11.1_amd64.deb -O /var/tmp/libcudnn8.deb  && \
-#  wget -nv https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/libnccl2_2.8.4-1+cuda11.1_amd64.deb -O /var/tmp/libnccl2.deb  && \
-#  dpkg -i /var/tmp/libcudnn8.deb /var/tmp/libnccl2.deb  && \
+  wget -nv https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/libcudnn8_8.0.5.39-1+cuda11.1_amd64.deb -O /var/tmp/libcudnn8.deb  && \
+  wget -nv https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/libnccl2_2.8.4-1+cuda11.1_amd64.deb -O /var/tmp/libnccl2.deb  && \
+  dpkg -i /var/tmp/libcudnn8.deb /var/tmp/libnccl2.deb  && \
   fix-permissions $CONDA_DIR  && \
   fix-permissions /home/$NB_USER
 
@@ -54,6 +54,7 @@ RUN apt-get update && \
 # rm -rf /var/lib/apt/lists/*"
 # wget -nv https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/cuda-ubuntu2004.pin -O /etc/apt/preferences.d/cuda-repository-pin-600 \u0026\u0026 	apt-key adv --fetch-keys https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/3bf863cc.pub \u0026\u0026 	add-apt-repository \"deb http://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/ /\" \u0026\u0026 	apt-get -q update \u0026\u0026 	apt-get install -qqy 		cuda-11-1 		cuda-nvcc-11-1 		cuda-toolkit-11-1 \u0026\u0026 	wget -nv https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/libcudnn8_8.0.5.39-1+cuda11.1_amd64.deb -O /var/tmp/libcudnn8.deb \u0026\u0026 	wget -nv https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2004/x86_64/libnccl2_2.8.4-1+cuda11.1_amd64.deb -O /var/tmp/libnccl2.deb \u0026\u0026 	dpkg -i /var/tmp/libcudnn8.deb /var/tmp/libnccl2.deb"
 #fix-permissions $CONDA_DIR \u0026\u0026 	fix-permissions /home/$NB_USER"
+
 #/opt/conda/bin/python3 -m pip install --upgrade pip"
 #/opt/conda/bin/conda install -y 		jaxlib==0.1.55 		tensorboard"
 #pip install torch 		-f https://download.pytorch.org/whl/rocm4.0.1/torch_stable.html \u0026\u0026 	pip install ninja \u0026\u0026 	pip install 'git+https://github.com/pytorch/[email protected]'"
@@ -80,3 +81,11 @@ RUN conda env create --file /tmp/env.yml && \
 
 # 3) install packages using notebook user
 USER jovyan
+# other packages here... 
+
+
+USER    $NB_UID:$NB_GID
+ENV     PATH=${PATH}:/usr/local/cuda/bin
+
+
+

env.yml

@@ -26,9 +26,9 @@ dependencies:
   - pyspng==0.1.0
   - networkx
   - scipy
-#  - ninja
-  - torch==1.8.0 #+cu111
-  - torchvision==0.9.0 #+cu111
+  - ninja
+  - torch==1.8.0+cu111
+  - torchvision==0.9.0+cu111
   - torchaudio==0.8.0
 #  - tensorflow==2.12.*
 #  - nvidia-cudnn-cu11==8.6.0.163