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Config and fixes

Config and fixes #735

Workflow file for this run

name: CI
on:
push:
pull_request:
types: [opened, reopened]
concurrency:
group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}'
cancel-in-progress: true
jobs:
Security:
name: Security Pipeline
uses: uc-cdis/.github/.github/workflows/securitypipeline.yaml@master
secrets: inherit
ci:
name: Build Image and Push
# TODO Add this line back once we update to Python 3.9 from 3.6
# needs: Security
uses: uc-cdis/.github/.github/workflows/image_build_push.yaml@master
secrets:
ECR_AWS_ACCESS_KEY_ID: ${{ secrets.ECR_AWS_ACCESS_KEY_ID }}
ECR_AWS_SECRET_ACCESS_KEY: ${{ secrets.ECR_AWS_SECRET_ACCESS_KEY }}
QUAY_USERNAME: ${{ secrets.QUAY_USERNAME }}
QUAY_ROBOT_TOKEN: ${{ secrets.QUAY_ROBOT_TOKEN }}