added ACR properties to imaging series node

gdcdictionary/schemas/aligned_reads_file.yaml

@@ -105,7 +105,7 @@ properties:
     #   - Other
 
   object_ids:
-    description: The list of file identifiers (object_ids, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
+    description: The list of file identifiers (URLs, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
     type: array
     items:
       type: string

gdcdictionary/schemas/aligned_reads_index_file.yaml

@@ -62,7 +62,7 @@ properties:
     type: string
 
   object_ids:
-    description: The list of file identifiers (object_ids, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
+    description: The list of file identifiers (URLs, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
     type: array
     items:
       type: string

gdcdictionary/schemas/clinical_file.yaml

@@ -78,7 +78,7 @@ properties:
     type: string
 
   object_ids:
-    description: The list of file identifiers (object_ids, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
+    description: The list of file identifiers (URLs, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
     type: array
     items:
       type: string

gdcdictionary/schemas/annotation.yaml → gdcdictionary/schemas/image_annotation.yaml

@@ -1,14 +1,14 @@
 $schema: "http://json-schema.org/draft-04/schema#"
 
-id: "annotation"
-title: Annotation
+id: "image_annotation"
+title: Image Annotation
 type: object
 nodeTerms: null
 namespace: https://imaging-hub.data-commons.org
-category: annotation
+category: file_metadata
 program: '*'
 project: '*'
-description: Information describing characteristics of imaging studies, series and instances (e.g., segmentations, bounding boxes, feature labels) and inferences based on those characteristics (e.g., predicted diagnoses). Annotations may be recorded in the course of clinical care or retrospectively for purposes of research (e.g., imaging annotations from PACS or retrospective labeling tools). Please refer to https://midrc.org/annotations to learn more about a particular batch of annotations.
+description: Files containing information describing characteristics of imaging studies, series and instances (e.g., segmentations, bounding boxes, feature labels) and inferences based on those characteristics (e.g., predicted diagnoses). Annotations may be recorded in the course of clinical care or retrospectively for purposes of research (e.g., imaging annotations from PACS or retrospective labeling tools). Please refer to https://midrc.org/annotations to learn more about a particular batch of annotations.
 additionalProperties: false
 submittable: true
 validators: null
@@ -123,7 +123,7 @@ properties:
     minimum: 0
 
   object_ids:
-    description: The list of file identifiers (object_ids, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
+    description: The list of file identifiers (URLs, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
     type: array
     items:
       type: string

gdcdictionary/schemas/image_file.yaml

@@ -93,7 +93,7 @@ properties:
       - "Not Reported"
 
   object_ids:
-    description: The list of file identifiers (object_ids, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
+    description: The list of file identifiers (data GUIDs, DRS URIs, or URLs, etc.) for the imaging series, if applicable.
     type: array
     items:
       type: string

gdcdictionary/schemas/imaging_series.yaml

@@ -55,14 +55,30 @@ properties:
 
   $ref: "_definitions.yaml#/ubiquitous_properties"
 
+  AcquisitionType:
+    description: 	(0018, 9302) Acquisition Type
+    type: string
+
   BodyPartExamined:
     description: (0018, 0015) Body Part Examined.
     type: string
 
+  Contrast:
+    description: Imaging done with contrast, 'Yes' or 'No'?
+    type: string
+
+  ContrastBolusAgent:
+    description: (0018, 0010) Contrast/Bolus Agent
+    type: string
+
   dicom_viewer_url:
     description: A URL where the imaging series can be viewed.
     type: string
 
+  MagneticFieldStrength:
+    description: (0018, 0087) Magnetic Field Strength
+    type: string
+
   Manufacturer:
     description: (0008, 0070) Manufacturer
     type: string
@@ -76,11 +92,27 @@ properties:
     type: string
 
   object_ids:
-    description: The list of file identifiers (object_ids, DRS URIs, or data GUIDs, etc.) for the imaging series, if applicable.
+    description: The list of file identifiers (data GUIDs, DRS URIs, or URLs, etc.) for the imaging series, if applicable.
     type: array
     items:
       type: string
 
+  Radiopharmaceutical:
+    description: 	(0018, 0031) Radiopharmaceutical
+    type: string
+
+  ReceiveCoilName:
+    description: (0018, 1250) Receive Coil Name
+    type: string
+
+  ScanningSequence:
+    description: (0018, 0020) Scanning Sequence
+    type: string
+
+  ScanOptions:
+    description: (0018, 0022) ScanOptions
+    type: string
+
   SeriesDescription:
     description: (0008, 103e) Series Description
     type: string
@@ -89,10 +121,35 @@ properties:
     description: (0020, 000e) Series Instance UID
     type: string
 
+  SequenceVariant:
+    description: 	(0018, 0021) Sequence Variant
+    type: string
+
+  SliceThickness:
+    description: (0018, 0050) Slice Thickness
+    type: string
+
+  SoftwareVersions:
+    description: (0018, 1020) Software Versions
+    type: string
+
+  TransmitCoilName:
+    description: (0018, 1251) Transmit Coil Name
+    type: string
+
   ViewPosition:
-    description: (0018,5101) Radiographic view associated with Patient Position (0018,5100).
+    description: (0018, 5101) Radiographic view associated with (0018, 5100) Patient Position.
     type: string
 
+
+
+
+
+
+
+
+
+
   # links
   imaging_studies:
     description: The submitter_id or id of the imaging_study this imaging_series belongs to, i.e., a link to a record in the parent node.
@@ -105,3 +162,7 @@ properties:
   datasets:
     description: The submitter_id or id of the dataset this imaging_series belongs to, i.e., a link to a record in the parent node.
     $ref: "_definitions.yaml#/to_many"
+
+
+
+

gdcdictionary/schemas/unaligned_reads_file.yaml

@@ -70,7 +70,7 @@ properties:
     type: string
 
   object_ids:
-    description: The list of file identifiers (object_ids, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
+    description: The list of file identifiers (URLs, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
     type: array
     items:
       type: string

gdcdictionary/schemas/variant_call_file.yaml

@@ -77,7 +77,7 @@ properties:
     type: string
 
   object_ids:
-    description: The list of file identifiers (object_ids, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
+    description: The list of file identifiers (URLs, DRS URIs, or data GUIDs, etc.) for the file(s), if applicable.
     type: array
     items:
       type: string