Updated imports to include the ode function from deSolve.

traitecoevo · Dec 2, 2024 · 9d9553b · 9d9553b
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diff --git a/NAMESPACE b/NAMESPACE
@@ -17,6 +17,7 @@ import(dplyr)
 import(ggplot2)
 import(methods)
 importFrom(RcppParallel,RcppParallelLibs)
+importFrom(deSolve,ode)
 importFrom(rstan,sampling)
 importFrom(rstantools,rstan_config)
 importFrom(stats,median)

diff --git a/R/hmde-package.R b/R/hmde-package.R
@@ -13,6 +13,7 @@
 #' @importFrom rstantools rstan_config
 #' @importFrom RcppParallel RcppParallelLibs
 #' @importFrom stats median
+#' @importFrom deSolve ode
 #'
 #' @references
 #' Stan Development Team (NA). RStan: the R interface to Stan. R package version 2.26.23. https://mc-stan.org

diff --git a/man/hmde_assign_data.Rd b/man/hmde_assign_data.Rd
diff --git a/vignettes/here_be_dragons.Rmd b/vignettes/here_be_dragons.Rmd
@@ -225,7 +225,7 @@ We get clear bimodality in both the histograms and the scatter plot. Bias in the
 We can double-check the numerical error by using an independent solver with the same step size. We use the `deSolve` package which has an implementation of RK4 and allows us to choose the step sizes using the time parameter.
 ```{r}
 #install.packages("deSolve")
-library(deSolve)
+#library(deSolve)
 
 #Create DE function
 DE <- function(Time, State, Pars) { #Implementation of DE