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Input validation for extract_data#147

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fontikar merged 79 commits intomastertraitecoevo/austraits:masterfrom 139-extract_data-fixtraitecoevo/austraits:139-extract_data-fixCopy head branch name to clipboardJan 13, 2025

Commits

Commits on Jan 12, 2023

• Trying out map for tests

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• Added version number to austraits_list_post

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• Added Wright_2019 in old rel test dataset so tests are consistent

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• Updated code to subset 4.0.0 from zenodo

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• Version testing for extract, and summarise_austriats

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• Combined extract_ tests and added version testing

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Commits on Jan 13, 2023

• Version tests for join_

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• Version tests for widetable and renamed test files

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• #60 fixed imports for pivot_wider, organised tests, currently not working for new version, waiting for austraits.build update

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• Minor naming adjustments in test

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• Merge branch 'multi_tests' into develop: All possible tests is run through the internal data subsets for version 3.0.2 and version 4.0.0. Pivot_ needs austraits.build fixes to implenment. Some mino…

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Commits on Jan 25, 2023

• Change some dependencies to imports

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• Remove helper functions to vignettes

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• Update deprecated functions

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• Restructure tests to run faster

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• Change GH actions triggers

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• ensure consistent ordering of rows

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Commits on Oct 16, 2023

• Merge branch 'master' into develop

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• bumped version number

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• Update to work with latest zenodo API (#81)

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Commits on Oct 19, 2023

• Pulled files we want to develop from change-v5

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Commits on Nov 21, 2023

• Changes for v5 austraits.build (#78)

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• Bumped version number and updated news

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• Added references to packages

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• Updated version for GH steps

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• Updated v number for GHA

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Commits on Nov 22, 2023

• Expanding testing suite to all 3 major versions of AusTraits (#86)

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• Added codecov yml

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• Merge branch 'develop' of https://github.com/traitecoevo/austraits into develop

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• Setting limit for patch cov

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Commits on Nov 26, 2023

• Merge branch 'master' into develop

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• bumped version number for dev

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Commits on Nov 27, 2023

• API related packages to Suggests (#89)

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Commits on Sep 3, 2024

• Merge branch 'master' into develop

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• Bumped version number

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Commits on Sep 4, 2024

• create new function check_compatibility (#95)

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Commits on Sep 9, 2024

• A generalised solution to deprecate switch functions (#100)

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Commits on Sep 12, 2024

• Mass removal of version switches (#102)

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Commits on Sep 13, 2024

• Update documentation (#103)

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Commits on Sep 26, 2024

• Add database_create_combined_table & revise join_ functions (#104)

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Commits on Nov 12, 2024

• Create generalised extract_data function (#117)

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Commits on Nov 13, 2024

• Renaming files and parameters (#119)

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• Extract from single table only (#121)

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Commits on Nov 14, 2024

• Updating print function and messaging style (#122)

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• function fixes (#124)

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Commits on Nov 15, 2024

• Minor fixes to print.traits.build (#127)

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• Remove function summarise_trait_means (#125)

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Commits on Nov 16, 2024

• Update bind_databases.R (#129)

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Commits on Nov 17, 2024

• Updated documentation and website for austraits 3.0.0 (#130)

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• Bumped version number and final fixes in documentation to pass R CMD CHECK

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Commits on Nov 18, 2024

• Added cheatsheet and thumbnails in README

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• Added cheatsheet and thumbnails in README

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• Updated gitignore

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• Minor testing patch in prep for austraits 3.0.0 (#133)

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• additional tests (#132)

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• Fill some gaps in testing (#134)

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Commits on Nov 19, 2024

• Function to test database structure (#135)

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• Bumped version number

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• Add missing cheatsheet (#136)

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• Reverted version number

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• Merge branch 'master' into develop

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Commits on Nov 20, 2024

• Merge branch 'master' into develop

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• Bumped version number

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Commits on Nov 22, 2024

• bug fix - join_location_properties, separate_trait_values (#138)

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Commits on Dec 9, 2024

• Bumped version number

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• Added validating checks

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• Refined tests

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Commits on Dec 17, 2024

• Updated actions version #142 (#143)

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• Merge branch 'develop' into 139-extract_data-fix

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Commits on Dec 18, 2024

• Reverted back to original functions and tests to start again

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Commits on Dec 19, 2024

• Checks for missingness #139

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• Checks if table name exists #139

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• Checks for whether col exists in table #139

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• Stuck on finding a way to allow for partial matches but detect non-matches... #139

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Commits on Jan 5, 2025

• Print generic updated to handle tibble and full databses #139, extract_data only assigns class if full database supplied #139

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Commits on Jan 6, 2025

• Added checks for column values if traits table supplied #139

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• Added checks on returned output for non-matches and will not throw error, updated tests accordingly #139

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• Added namespace in helper function to pass R CMD CHECK

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Commits on Jan 13, 2025

• Moved helper test file to testthat dir and bumped version number

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