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add new study: Stephens_2024 (#793)
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add new dataset of data extracted from EUCLID

*  includes data for 3 new traits, bud width, bud length, and buds per inflorescence.
*  includes data on juvenile leaf dimensions for all EUCLID taxa

To avoid a "counter" context, have switched to mapping in taxa by their EUCLID name, not their accepted_name - then subspecies that collapse to species are merged together once read in and retain their separate original names.
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ehwenk authored May 13, 2024
1 parent e43c1c7 commit dcc9276
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23 changes: 22 additions & 1 deletion config/traits.yml
Original file line number Diff line number Diff line change
Expand Up @@ -3562,7 +3562,28 @@ traits:
red: Perianth colour is red.
white: Perianth colour is white.
yellow: Perianth colour is yellow.
entity_URI: https://w3id.org/APD/traits/trait_0012418
entity_URI: https://w3id.org/APD/traits/trait_0012418
bud_length:
label: Bud length
description: The length of the bud.
type: numeric
units: cm
allowed_values_min: 0.01
allowed_values_max: 200.0
bud_width:
label: Bud width
description: The width of the bud.
type: numeric
units: cm
allowed_values_min: 0.01
allowed_values_max: 200.0
buds_per_inflorescence:
label: Buds per inflorescence
description: The number of buds per inflorescence.
type: numeric
units: '{count}/{count}'
allowed_values_min: 1
allowed_values_max: 1000
flower_length:
label: Flower length
description: A floral organ morphology trait [TO:0000862] which is the length
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18 changes: 9 additions & 9 deletions data/Stephens_2023/metadata.yml
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Expand Up @@ -2,16 +2,16 @@ source:
primary:
key: Stephens_2023
bibtype: Article
year: 2023
year: '2023'
author: Ruby E. Stephens and Rachael V. Gallagher and Lily Dun and Will Cornwell
and Hervé Sauquet
title: Insects pollinated flowering plants for most of angiosperm evolutionary
history
journal: bioRxiv
volume: .na
number: .na
pages: .na
doi: 10.1101/2023.01.31.526530
journal: New Phytologist
title: Insect pollination for most of angiosperm evolutionary history
volume: '240'
number: '2'
pages: 880-891
doi: 10.1111/nph.18993
issn: 1469-8137
contributors:
data_collectors:
- last_name: Stephens
Expand All @@ -28,7 +28,7 @@ contributors:
dataset_curators: Elizabeth Wenk
dataset:
data_is_long_format: yes
custom_R_code: '
custom_R_code: '
data %>%
group_by(canonicalName, trait_name) %>%
mutate(value = paste0(value, collapse = " ")) %>%
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1,041 changes: 1,041 additions & 0 deletions data/Stephens_2024/data.csv

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