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Molecular crystal structure prediction using genetic algorithms and DFT
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timcrose/GAtor
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**************************************** GAtor code README **************************************** .-._ _ _ _ _ _ _ _ _ .-''-.__.-'00 '-' ' ' ' ' ' ' ' '-. '.___ ' . .--_'-' '-' '-' _'-' '._ VV V 'vv-' '_ '. .' _..' '.'. '=.____.=_.--' :_.__.__:_ '. : : (((____.-' '-. / : : (((-'\ .' / _____..' .' '-._____.-' **************************************** Welcome to the GAtor genetic algorithm for molecular crystal structure prediction GAtor uses python 2.7 and numpy >1.9. Additionally it requires the following python packages: 1) pymatgen 2) sci-kit learn These can be installed simply using pip The source code is split into modules located in ./src An example calculation folder with further instructions for running the code is located in ./tutorial ******************************************* Developer details The master script which runs GAtor is located at ./src/GAtor_master.py. This mainly deals with the parallelization and runs ./core/run_GA.py for each parallel replica The main script which controls the GA tasks of each parallel replica is located at ./core/run_GA.py The main class which constructs GA structure objects (geometry and additional properties) is located at ./src/structures/structure.py The main modules which generate new structures are located in ./src/mutation and ./src/crossover and can be swapped out depending on the desired functionality
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Molecular crystal structure prediction using genetic algorithms and DFT
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