Merge branch 'main' into mirai

.github/workflows/rhub.yaml

@@ -1,13 +1,13 @@
-# R-hub's genetic GitHub Actions workflow file. It's canonical location is at
-# https://github.com/r-hub/rhub2/blob/v1/inst/workflow/rhub.yaml
+# R-hub's generic GitHub Actions workflow file. It's canonical location is at
+# https://github.com/r-hub/actions/blob/v1/workflows/rhub.yaml
 # You can update this file to a newer version using the rhub2 package:
 #
-# rhub2::rhub_setup()
+# rhub::rhub_setup()
 #
 # It is unlikely that you need to modify this file manually.
 
 name: R-hub
-run-name: ${{ github.event.inputs.name || format('Manually run by {0}', github.triggering_actor) }} (${{ github.event.inputs.id }})
+run-name: "${{ github.event.inputs.id }}: ${{ github.event.inputs.name || format('Manually run by {0}', github.triggering_actor) }}"
 
 on:
   workflow_dispatch:
@@ -33,7 +33,7 @@ jobs:
 
     steps:
     # NO NEED TO CHECKOUT HERE
-    - uses: r-hub/rhub2/actions/rhub-setup@v1
+    - uses: r-hub/actions/setup@v1
       with:
         config: ${{ github.event.inputs.config }}
       id: rhub-setup
@@ -51,8 +51,16 @@ jobs:
       image: ${{ matrix.config.container }}
 
     steps:
-      - uses: actions/checkout@v3
-      - uses: r-hub/rhub2/actions/rhub-check@v1
+      - uses: r-hub/actions/checkout@v1
+      - uses: r-hub/actions/platform-info@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+      - uses: r-hub/actions/setup-deps@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+      - uses: r-hub/actions/run-check@v1
         with:
           token: ${{ secrets.RHUB_TOKEN }}
           job-config: ${{ matrix.config.job-config }}
@@ -68,12 +76,20 @@ jobs:
         config: ${{ fromJson(needs.setup.outputs.platforms) }}
 
     steps:
-      - uses: actions/checkout@v3
-      - uses: r-hub/rhub2/actions/rhub-setup-r@v1
+      - uses: r-hub/actions/checkout@v1
+      - uses: r-hub/actions/setup-r@v1
+        with:
+          job-config: ${{ matrix.config.job-config }}
+          token: ${{ secrets.RHUB_TOKEN }}
+      - uses: r-hub/actions/platform-info@v1
+        with:
+          token: ${{ secrets.RHUB_TOKEN }}
+          job-config: ${{ matrix.config.job-config }}
+      - uses: r-hub/actions/setup-deps@v1
         with:
           job-config: ${{ matrix.config.job-config }}
           token: ${{ secrets.RHUB_TOKEN }}
-      - uses: r-hub/rhub2/actions/rhub-check@v1
+      - uses: r-hub/actions/run-check@v1
         with:
           job-config: ${{ matrix.config.job-config }}
           token: ${{ secrets.RHUB_TOKEN }}

DESCRIPTION

@@ -1,18 +1,19 @@
 Package: purrr
 Title: Functional Programming Tools
-Version: 1.0.2.9000
+Version: 1.0.4.9000
 Authors@R: c(
     person("Hadley", "Wickham", , "[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0003-4757-117X")),
     person("Lionel", "Henry", , "[email protected]", role = "aut"),
-    person("Posit Software, PBC", role = c("cph", "fnd"))
+    person("Posit Software, PBC", role = c("cph", "fnd"),
+           comment = c(ROR = "https://ror.org/03wc8by49"))
   )
 Description: A complete and consistent functional programming toolkit for
     R.
 License: MIT + file LICENSE
 URL: https://purrr.tidyverse.org/, https://github.com/tidyverse/purrr
 BugReports: https://github.com/tidyverse/purrr/issues
-Depends: 
+Depends:
     R (>= 4.0)
 Imports:
     cli (>= 3.6.1),
@@ -34,7 +35,7 @@ Suggests:
     tidyselect
 LinkingTo:
     cli
-VignetteBuilder: 
+VignetteBuilder:
     knitr
 Biarch: true
 Config/build/compilation-database: true

NEWS.md

@@ -1,17 +1,21 @@
 # purrr (development version)
 
-* purrr gains the capability for parallel and distributed map, powered by the
+* purrr gains the capacity for parallel and distributed map, powered by the
   mirai package. The argument `.parallel` has been added to `map()`, `map2()`,
   `pmap()` and variants to enable this. See `?parallelization` for more details
   (@shikokuchuo, #1163).
-
-* Added a test to assert that `list_transpose()` does not work on data frames
-  (@KimLopezGuell, #1141, #1149).
-
-* Added `imap_vec()` (#1084).
-
-* `list_transpose()` inspects all elements to determine the correct
-  template if it's not provided by the user  (#1128, @krlmlr).
+
+# purrr 1.0.4
+
+# purrr 1.0.3
+
+* Varies fixed to bring purrr back into compliance with R CMD check (@shikokuchuo, @jayhesselberth).
+
+* Added missing `imap_vec()` (#1084)
+
+* `list_transpose()` now asserts that it does not work on data frames
+  (@KimLopezGuell, #1141, #1149), and inspects all elements to determine
+  the correct template if not provided by the user  (#1128, @krlmlr).
 
 # purrr 1.0.2
 

R/progress-bars.R

@@ -22,7 +22,7 @@
 #'   the progress bar type. It must be given for the `custom` type.
 #'   Format strings may contain R expressions to evaluate in braces.
 #'   They support cli [pluralization][cli::pluralization], and
-#'   [styling][inline-markup] and they can contain special
+#'   [styling][cli::inline-markup] and they can contain special
 #'   [progress variables][cli::progress-variables].
 #' * `format_done`: format string for successful termination. By default
 #'   the same as `format`.

cran-comments.md

@@ -4,4 +4,4 @@
 
 ## revdepcheck results
 
-This was a patch release to fix R CMD check issues; I did not check revdeps.
+This was a patch release to fix R CMD check issues. I saw 2 false positives in my revdepchecks (meta and waywiser) and failed to check a further 45 packages.

revdep/README.md

@@ -1,30 +1,65 @@
 # Revdeps
 
-## Failed to check (15)
+## Failed to check (51)
 
-|package      |version |error |warning |note |
-|:------------|:-------|:-----|:-------|:----|
-|elbird       |0.2.5   |1     |        |     |
-|ggPMX        |?       |      |        |     |
-|immcp        |?       |      |        |     |
-|ImputeRobust |?       |      |        |     |
-|NA           |?       |      |        |     |
-|NA           |?       |      |        |     |
-|NA           |?       |      |        |     |
-|NA           |?       |      |        |     |
-|numbat       |?       |      |        |     |
-|NA           |?       |      |        |     |
-|pathwayTMB   |?       |      |        |     |
-|Platypus     |?       |      |        |     |
-|NA           |?       |      |        |     |
-|RVA          |?       |      |        |     |
-|NA           |?       |      |        |     |
+|package          |version |error |warning |note |
+|:----------------|:-------|:-----|:-------|:----|
+|AovBay           |0.1.0   |1     |        |     |
+|arealDB          |0.9.4   |1     |        |     |
+|autoReg          |?       |      |        |     |
+|bayesCT          |0.99.3  |1     |        |     |
+|bspcov           |1.0.1   |1     |        |     |
+|censored         |?       |      |        |     |
+|CGPfunctions     |0.6.3   |1     |        |     |
+|CSCNet           |?       |      |        |     |
+|dartR.base       |?       |      |        |     |
+|dartR.popgen     |?       |      |        |     |
+|deeptrafo        |?       |      |        |     |
+|dibble           |?       |      |        |     |
+|DR.SC            |3.4     |1     |        |     |
+|epizootic        |1.0.0   |1     |        |     |
+|GeoTox           |?       |      |        |     |
+|GseaVis          |?       |      |        |     |
+|hettx            |0.1.3   |1     |        |     |
+|immcp            |?       |      |        |     |
+|invivoPKfit      |2.0.0   |1     |        |     |
+|jsmodule         |?       |      |        |     |
+|lnmixsurv        |?       |      |        |     |
+|lsirm12pl        |1.3.3   |1     |        |     |
+|MantaID          |?       |      |        |     |
+|metajam          |0.3.1   |1     |        |     |
+|miWQS            |0.4.4   |1     |        |1    |
+|multinma         |0.7.2   |1     |        |     |
+|nesRdata         |0.3.1   |1     |        |     |
+|obliqueRSF       |?       |      |        |     |
+|ontologics       |0.7.4   |1     |        |     |
+|OVtool           |1.0.3   |1     |        |     |
+|pammtools        |?       |      |        |     |
+|pathwayTMB       |?       |      |        |     |
+|pencal           |?       |      |        |     |
+|quid             |0.0.1   |1     |        |     |
+|rdflib           |0.2.9   |1     |        |     |
+|rmlnomogram      |?       |      |        |     |
+|robber           |?       |      |        |     |
+|rplec            |?       |      |        |     |
+|RVA              |?       |      |        |     |
+|scCustomize      |3.0.1   |1     |        |1    |
+|scpi             |2.2.6   |1     |        |     |
+|SCpubr           |?       |      |        |     |
+|SEERaBomb        |2019.2  |1     |        |     |
+|SensIAT          |?       |      |        |     |
+|SimplyAgree      |0.2.0   |1     |        |     |
+|ssdGSA           |?       |      |        |     |
+|SSHAARP          |?       |      |        |     |
+|stabiliser       |1.0.6   |1     |        |     |
+|tidyseurat       |0.8.0   |1     |        |     |
+|TriDimRegression |1.0.2   |1     |        |     |
+|WRTDStidal       |1.1.4   |1     |        |     |
 
-## New problems (3)
+## New problems (2)
 
-|package   |version |error  |warning |note |
-|:---------|:-------|:------|:-------|:----|
-|[ast2ast](problems.md#ast2ast)|0.2.1   |__+1__ |        |     |
-|[openalexR](problems.md#openalexr)|1.0.0   |       |__+1__  |     |
-|[rearrr](problems.md#rearrr)|0.3.2   |__+1__ |        |     |
+|package  |version |error  |warning |note     |
+|:--------|:-------|:------|:-------|:--------|
+|[meta](problems.md#meta)|8.0-2   |       |        |1 __+1__ |
+|[waywiser](problems.md#waywiser)|0.6.0   |__+1__ |        |1        |
 

revdep/cran.md

@@ -1,31 +1,65 @@
 ## revdepcheck results
 
-We checked 1437 reverse dependencies (1430 from CRAN + 7 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 1943 reverse dependencies (1937 from CRAN + 6 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
 
- * We saw 3 new problems
- * We failed to check 8 packages
+ * We saw 2 new problems
+ * We failed to check 45 packages
 
 Issues with CRAN packages are summarised below.
 
 ### New problems
 (This reports the first line of each new failure)
 
-* ast2ast
-  checking tests ... ERROR
+* meta
+  checking installed package size ... NOTE
 
-* openalexR
-  checking re-building of vignette outputs ... WARNING
-
-* rearrr
-  checking tests ... ERROR
+* waywiser
+  checking running R code from vignettes ... ERROR
 
 ### Failed to check
 
-* elbird       (NA)
-* ggPMX        (NA)
-* immcp        (NA)
-* ImputeRobust (NA)
-* numbat       (NA)
-* pathwayTMB   (NA)
-* Platypus     (NA)
-* RVA          (NA)
+* AovBay           (NA)
+* arealDB          (NA)
+* autoReg          (NA)
+* bayesCT          (NA)
+* bspcov           (NA)
+* censored         (NA)
+* CGPfunctions     (NA)
+* CSCNet           (NA)
+* dartR.base       (NA)
+* dartR.popgen     (NA)
+* deeptrafo        (NA)
+* DR.SC            (NA)
+* epizootic        (NA)
+* GseaVis          (NA)
+* hettx            (NA)
+* immcp            (NA)
+* invivoPKfit      (NA)
+* jsmodule         (NA)
+* lnmixsurv        (NA)
+* lsirm12pl        (NA)
+* metajam          (NA)
+* miWQS            (NA)
+* multinma         (NA)
+* nesRdata         (NA)
+* obliqueRSF       (NA)
+* ontologics       (NA)
+* OVtool           (NA)
+* pammtools        (NA)
+* pathwayTMB       (NA)
+* pencal           (NA)
+* quid             (NA)
+* rdflib           (NA)
+* robber           (NA)
+* RVA              (NA)
+* scCustomize      (NA)
+* scpi             (NA)
+* SCpubr           (NA)
+* SEERaBomb        (NA)
+* SimplyAgree      (NA)
+* ssdGSA           (NA)
+* SSHAARP          (NA)
+* stabiliser       (NA)
+* tidyseurat       (NA)
+* TriDimRegression (NA)
+* WRTDStidal       (NA)