Add spectrum visualization notebook

[KasukabeDefenceForce]

📝 Description

Type: 🪲 bugfix | 🚀 feature | ☣️ breaking change | 🚦 testing | 📝 documentation | 🎢 infrastructure
This PR aims at adding a spectrum visualization notebook which has some examples regarding how can someone plot the spectrum data.

Also, link issues affected by this pull request by using the keywords: close, closes, closed, fix, fixes, fixed, resolve, resolves or resolved.

📌 Resources

Examples, notebooks, and links to useful references.

🚦 Testing

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• I requested two reviewers for this pull request
• I updated the documentation according to my changes
• I built the documentation by applying the build_docs label

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[tardis-bot]

*beep* *bop*
Hi human,
I ran ruff on the latest commit (73333c1).
Here are the outputs produced.
Results can also be downloaded as artifacts here.
Summarised output:

34	W291  	[*] Trailing whitespace
7	I001  	[*] Import block is un-sorted or un-formatted
6	E999  	[ ] SyntaxError: Expected a statement
6	W293  	[*] Blank line contains whitespace
3	INP001	[ ] File `tardis/analysis/opacities.py` is part of an implicit namespace package. Add an `__init__.py`.
2	PIE808	[*] Unnecessary `start` argument in `range`
2	E712  	[*] Avoid equality comparisons to `False`; use `if not ...:` for false checks
2	F401  	[*] `tardis.tests.test_util.monkeysession` imported but unused
2	F811  	[ ] Redefinition of unused `monkeysession` from line 6
1	E703  	[*] Statement ends with an unnecessary semicolon

Complete output(might be large):

docs/analysing_tardis_outputs/index.rst:1:1: E999 SyntaxError: Expected an expression
docs/analysing_tardis_outputs/index.rst:12:1: W293 [*] Blank line contains whitespace
docs/analysing_tardis_outputs/visualization/demo_observed_spectrum.dat:1:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons
docs/analysing_tardis_outputs/visualization/how_to_generating_widgets.ipynb:cell 5:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/analysing_tardis_outputs/visualization/how_to_generating_widgets.ipynb:cell 5:3:5: F401 [*] `tardis.visualization.shell_info_from_hdf` imported but unused
docs/analysing_tardis_outputs/visualization/how_to_sdec_plot.ipynb:cell 2:2:1: I001 [*] Import block is un-sorted or un-formatted
docs/analysing_tardis_outputs/visualization/how_to_sdec_plot.ipynb:cell 29:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/analysing_tardis_outputs/visualization/index.rst:1:1: E999 SyntaxError: Expected a statement
docs/analysing_tardis_outputs/visualization/index.rst:25:1: W293 [*] Blank line contains whitespace
docs/analysing_tardis_outputs/visualization/tardis_example.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons
docs/analysing_tardis_outputs/visualization/tutorial_convergence_plot.ipynb:cell 9:4:28: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/tutorial_convergence_plot.ipynb:cell 12:29:1: W293 [*] Blank line contains whitespace
docs/analysing_tardis_outputs/visualization/tutorial_convergence_plot.ipynb:cell 13:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/analysing_tardis_outputs/visualization/tutorial_montecarlo_packet_visualization.ipynb:cell 5:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/analysing_tardis_outputs/visualization/using_widgets.rst:1:1: E999 SyntaxError: Expected an expression
docs/analysing_tardis_outputs/visualization/using_widgets.rst:7:83: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:15:69: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:23:76: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:24:41: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:26:77: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:29:79: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:39:75: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:40:80: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:41:78: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:42:75: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:43:75: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:51:77: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:52:79: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:53:73: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:54:71: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:62:74: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:63:76: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:71:80: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:72:79: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:80:78: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:81:77: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:82:77: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:109:48: W291 [*] Trailing whitespace
docs/analysing_tardis_outputs/visualization/using_widgets.rst:161:77: W291 [*] Trailing whitespace
docs/index.rst:1:1: E999 SyntaxError: Expected a statement
docs/index.rst:21:51: W291 [*] Trailing whitespace
docs/index.rst:43:76: W291 [*] Trailing whitespace
docs/index.rst:44:64: W291 [*] Trailing whitespace
docs/index.rst:45:71: W291 [*] Trailing whitespace
docs/index.rst:46:69: W291 [*] Trailing whitespace
docs/index.rst:47:68: W291 [*] Trailing whitespace
docs/index.rst:66:1: W293 [*] Blank line contains whitespace
docs/index.rst:88:1: W293 [*] Blank line contains whitespace
docs/index.rst:112:1: W293 [*] Blank line contains whitespace
docs/io/grid/how_to_TardisGridTutorial.ipynb:cell 2:1:1: I001 [*] Import block is un-sorted or un-formatted
docs/io/grid/how_to_TardisGridTutorial.ipynb:cell 7:2:74: W291 [*] Trailing whitespace
docs/io/grid/how_to_TardisGridTutorial.ipynb:cell 14:1:47: W291 [*] Trailing whitespace
docs/io/grid/how_to_TardisGridTutorial.ipynb:cell 14:4:46: E703 [*] Statement ends with an unnecessary semicolon
docs/io/grid/how_to_TardisGridTutorial.ipynb:cell 15:2:55: W291 [*] Trailing whitespace
tardis/analysis/opacities.py:1:1: INP001 File `tardis/analysis/opacities.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/grid/tests/test_grid.py:1:1: INP001 File `tardis/grid/tests/test_grid.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/io/model/readers/tests/test_arepo_parser.py:1:1: INP001 File `tardis/io/model/readers/tests/test_arepo_parser.py` is part of an implicit namespace package. Add an `__init__.py`.
tardis/transport/montecarlo/tests/conftest.py:14:5: F811 Redefinition of unused `opacity_state_initialize` from line 7
tardis/visualization/tools/tests/test_convergence_plot.py:3:1: I001 [*] Import block is un-sorted or un-formatted
tardis/visualization/tools/tests/test_convergence_plot.py:6:36: F401 [*] `tardis.tests.test_util.monkeysession` imported but unused
tardis/visualization/tools/tests/test_convergence_plot.py:87:24: PIE808 [*] Unnecessary `start` argument in `range`
tardis/visualization/tools/tests/test_convergence_plot.py:111:22: PIE808 [*] Unnecessary `start` argument in `range`
tardis/visualization/tools/tests/test_convergence_plot.py:198:9: E712 Avoid equality comparisons to `False`; use `if not ...:` for false checks
tardis/visualization/tools/tests/test_convergence_plot.py:215:9: E712 Avoid equality comparisons to `False`; use `if not ...:` for false checks
tardis/visualization/tools/tests/test_convergence_plot.py:220:40: F811 Redefinition of unused `monkeysession` from line 6
Found 65 errors.
[*] 52 fixable with the `--fix` option (2 hidden fixes can be enabled with the `--unsafe-fixes` option).

[tardis-bot]

*beep* *bop*

Hi, human.

The docs workflow has succeeded ✔️

Click here to see your results.

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 69.17%. Comparing base (304154a) to head (73333c1).
Report is 2 commits behind head on master.

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #2964      +/-   ##
==========================================
- Coverage   69.54%   69.17%   -0.37%     
==========================================
  Files         228      228              
  Lines       16429    16429              
==========================================
- Hits        11425    11365      -60     
- Misses       5004     5064      +60     

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