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@github-actions github-actions released this 29 Jan 19:39
· 13 commits to main since this release
v1.6.1
82b70bd

CHANGELOG

v1.6.1 (2025-01-29)

Bug Fixes

v1.6.0 (2025-01-29)

Features

v1.5.0 (2025-01-29)

Features

  • Add GO word cloud on detail page
    (46bcb44)

  • style: fix page alignment

  • feat: add go term retrieval

  • feat: add go term word cloud

  • feat: add wordcloud display

  • style: add text-styling to svg

  • refactor: prevent single letter words

  • refactor: improve text

  • style: better font scaling

  • feat: add GO loading state

v1.4.5 (2025-01-29)

Bug Fixes

  • Add topdb signal peptide
    (195b0b0)

v1.4.4 (2025-01-28)

Bug Fixes

  • Count filter was not handled correctly
    (aab0d3e)

Code Style

Continuous Integration

  • Force psr install
    (b38d67c)

  • More robust building by checking for psr
    (88cc110)

v1.4.3 (2024-11-29)

Bug Fixes

  • frontend: Fix initial theme incorrectly rendered on detail pages;
    (dee1ce2)

Issue was caused by skeleton UI not handling modeSwitches on SSR. Cf: -
skeletonlabs/skeleton#2598 (comment) -
skeletonlabs/skeleton#905 (comment)

Build System

  • frontend: Update dependencies
    (221786b)

v1.4.2 (2024-11-28)

Bug Fixes

  • frontend: Add app version
    (1f5af77)

  • frontend: Catch issue with structureState race condition
    (0f5099e)

Code Style

  • frontend: Improve error display for filter problems
    (5ab7740)

Refactoring

  • frontend: Add db search time display
    (3eaddcd)

  • frontend: Change to use dev version in development
    (1fdf201)

v1.4.1 (2024-11-28)

Bug Fixes

  • frontend: Restore 25 as more sane default
    (f09842f)

v1.4.0 (2024-11-28)

Bug Fixes

  • Fix page 0, one confusion
    (3998946)

  • Sentry variable name
    (2b6941c)

  • backend: Fix invalid clade validation
    (3a61ba8)

  • backend: Fix unclassified not being processable
    (1023e59)

  • backend: Resolve issue with sqlalchemy new orm API
    (68138c1)

  • frontend: Forward pagination
    (03f219e)

  • frontend: Go back now uses correct logic
    (c2877f8)

  • frontend: Reset Kingdom filter to all if otherwise invalid
    (6e88fd0)

Build System

Code Style

  • frontend: Remove pagination artifact for random
    (a5ddca4)

Documentation

  • Document search is only for page
    (a58044f)

Features

  • Add query transfomer to allow passing in a queryClient
    (0e38fc0)

  • backend: Add more efficient count
    (05e5d96)

  • backend: Implement cursor based pagination
    (e9fbe34)

  • frontend: Implement pagination display
    (a2aa857)

Refactoring

  • Create wrapper to allow passing query keys
    (a2ce413)

  • Dataquery setup for client use
    (37b63f4)

  • Improve query store usage
    (d1a4ae4)

  • Integrate count into api and improve file structure
    (a36ffac)

  • Remove debug logging
    (7f4b5d0)

  • backend: Remove obsolete sorting
    (887d52c)

  • backend: Remove query sorting by id.
    (6acdc53)

Sorting by id slows the query down too much. In theory it should be ifine to not sort if for an auto
incrementing key

  • frontend: Add cursor based pagination
    (e7dc5ad)

  • frontend: Add data-based row count
    (4a8defa)

  • frontend: Improve table rendering
    (eccfd36)

  • frontend: Move pagination to top-level
    (6f2c755)

  • frontend: Regenerate client
    (91d0e90)

  • frontend: Remove dataloader component for store implementation
    (11419d1)

  • frontend: Switch to wrapper queries with queryClient
    (db5da1d)

  • frontend: Up page size to 50
    (483062f)

v1.3.3 (2024-11-24)

Bug Fixes

  • Update citation to latest biorxiv
    (19a8685)

v1.3.2 (2024-11-21)

Bug Fixes

  • frontend: Hotfix remove debug info
    (4d88b9a)

v1.3.1 (2024-11-21)

Bug Fixes

  • frontend: Fix build missing variable
    (67b41d0)

v1.3.0 (2024-11-21)

Features

  • frontend: Add sentry frontend logging
    (e4c5b81)

  • chore: update dependencies

  • build: upload sentry sourcemaps

  • build: add sentry build options

  • build: add sentry config

  • fix(frontend): improve sidebar navigation

  • build(frontend): add svelte version

  • feat(frontend): configure sentry logging

  • fix(frontend): remove integration for server

  • build(frontend): update orval version

  • fix(backend): only allow GET

This is supposed to block more malicious requests

  • chore(backend): default value for traces

  • build(frontend): add variable sentry sampling rate

  • refactor(frontend): improve sentry initialization

  • fix(frontend): adjust hight which now works again

  • fix(frontend): remove sentry sveltekit due to bug

getsentry/sentry-javascript#8291

  • refactor(frontend): add expected handle error method

  • feat(frontend): add breadcrumbs to sentry

Merges: #11

v1.2.3 (2024-11-20)

Bug Fixes

  • frontend: More graceful handling for TMAlphaFold
    (#10,
    50ff091)

Build System

  • Fix sentry version name
    (5221942)

Documentation

v1.2.2 (2024-11-14)

Bug Fixes

  • frontend: Add missing label for beta-sheet uniprot
    (452ab5e)

v1.2.1 (2024-11-13)

Bug Fixes

  • Update environment for tagging
    (2e5e57b)

Build System

  • Fix sentry release version not found issue
    (9328a97)

  • Restructure tagging to improve releasing.
    (1537c76)

Now tagging happens first and only then triggers the release.

v1.2.0 (2024-11-13)

Code Style

Features

  • frontend: Add annotation tooltip
    (cc536d8)

  • frontend: Add pLDDT view
    (23e0d01)

v1.1.1 (2024-11-13)

Bug Fixes

Build System

  • Add watchtower notification settings
    (c3a5585)

Chores

  • backend: Ignore CORSErrors for Sentry
    (45483f1)

Code Style

  • Change name to beta barrel
    (b6a1516)

  • Change theme to blue based
    (ca76161)

  • frontend: Remove uniprot accession link
    (12b15da)

  • frontend: Switch to transparent svg
    (154be51)

v1.1.0 (2024-11-11)

v1.0.10 (2024-11-11)

Build System

  • Remove erroneous network name
    (b54c42b)

Features

v1.0.9 (2024-11-11)

Bug Fixes

  • backend: Move data to root
    (53ae367)

  • backend: Remove shell wrapping
    (3e42296)

v1.0.8 (2024-11-11)

v1.0.7 (2024-11-11)

Bug Fixes

v1.0.6 (2024-11-11)

Bug Fixes

  • backend: Hotfix for compose issues
    (4e38ce0)

v1.0.5 (2024-11-11)

Bug Fixes

  • Update production config
    (60fe3ea)

v1.0.4 (2024-11-11)

Bug Fixes

v1.0.3 (2024-11-11)

Bug Fixes

  • backend: Force data directory
    (86bb193)

v1.0.2 (2024-11-10)

Bug Fixes

Build System

v1.0.1 (2024-11-10)

Bug Fixes

  • Better check for release
    (7394634)

Build System

v1.0.0 (2024-11-08)

Bug Fixes

https://stackoverflow.com/a/77157818

  • Change paths
    (3c30a8e)

  • Correct error handling for missing db connection
    (2727e51)

  • Image name
    (c27a3d3)

  • Path
    (5e03492)

  • Path update
    (91a7a7e)

  • Paths
    (4d5fe11)

  • Residue highlighting
    (6d73582)

  • Trigger viewer ready event correctly
    (f2ff578)

  • Update more paths
    (aeb6f51)

  • (frontend): Correct TMvisDB header
    (0ff2208)

  • backend: Fix linting issues
    (8d39ac7)

  • build: Remove obsolete variable
    (df6492b)

  • frontend: Add missing titles
    (baedff4)

  • frontend: Correct issue templates
    (fa6f96a)

  • frontend: Css var name generation
    (7e68cdc)

  • frontend: Fix obsolete logging and functions
    (e39e171)

  • frontend: Remove import bugs
    (6d9aad4)

  • frontend: Resolve some ts issues
    (ddaa765)

  • frontend: Update z-index to proper tailwind value
    (6eea305)

Build System

Removed query tools from production

  • frontend: Update dependencies
    (73437a0)

  • frontend: Update docker compose to work locally
    (061044d)

Chores

  • Add analyze to db migrations
    (58b07ad)

  • Add initial alembic migration
    (06797b5)

  • Add sqlmodel to mako template
    (34574ce)

  • Fix db migration to work with sqlite
    (2f2fe88)

  • Fix missing import in alembic file
    (278f6e9)

  • Rename scripts folder to be more understandable
    (8269a0f)

Continuous Integration

  • Add production environment to frontend builder
    (be3daef)

  • Add semantic release basics
    (02432f6)

  • Fix variables
    (90bab8f)

  • Remove .env file
    (f37beda)

  • Temporarily force docker build
    (49ea4bf)

  • frontend: Add basic docker workflow
    (99db8dd)

Documentation

Features

  • Add favicon and page titles
    (6174c12)

  • frontend: Add better GitHub support links
    (2cc41e2)

  • frontend: Add bug label
    (3dd5365)

  • frontend: Add custom privacy notice
    (f0d5b39)

  • frontend: Add maintenance mode
    (1931e71)

  • frontend: Add overview image
    (d3afe3c)

  • frontend: Add reference component
    (0c496a6)

  • frontend: Add reference component and citation page
    (b0b1118)

  • frontend: Add structure color visualization (#3,
    0d6eddd)

  • Add plugin check to readiness

  • Add annotation tracks

  • Refactor color handling for annotations

  • Add color pattern selector

  • Remove polling

  • Add options for improved highlighting

  • Decouple event handling from highlighting logic

  • Remove manual Background State

  • Add selection colors

  • Fix typing

  • Add annotation color theming for structure

  • Fiddle with z-scores of canvas

  • Move to store based selection

  • Fix add highlight on load

General improvements to event handling for viewer loading

  • Dependency update

  • frontend: Improve maintenance styling
    (f583fb8)

  • frontent: Add missing lables for entity issues
    (f076932)

Performance Improvements

  • Change ro config to be more compatible with alembic
    (8df1ee9)

  • Set db to read only mode
    (20e6d8e)

  • Update cache size
    (8d83e17)

  • frontend: Dynamically load citation plugin to avoid large bundle
    (b08f285)

Refactoring

  • frontend: Improve layout maintainability
    (1e67048)

  • frontend: Remove maintenance message
    (a2f422a)

  • frontend: Unify icons
    (4a73095)

Assets 3
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