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New release. #1254

Merged
merged 143 commits into from
Jan 31, 2025
Merged

New release. #1254

merged 143 commits into from
Jan 31, 2025

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luciansmith
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adelhpour and others added 30 commits May 1, 2024 18:14
- it now runs on macos machines with Apple Silicon chips

- gcc is now updated in all linux platforms

- Host architecture is no longer provided in the matrix and is extracted internally

- artifacts names now provide more info about the machine and the compiler they were built on
Convert to the new GITHUB_OUTPUT instead.  Might not work with 'message'; could need to use 'echo' instead?
In theory, we'll need to update to node20 soon; this gets us partway there, and also sets up some python things.
Hopefully should work with node20?  Might need v4 for that.  Relative paths don't work, cf actions/upload-artifact#176
luciansmith and others added 29 commits September 18, 2024 17:28
(No llvm for it.)
Without this i am getting `'uint32_t' is not a member of 'std'`. See
also https://gcc.gnu.org/gcc-13/porting_to.html "Header dependency
changes".
…pdated (the issue with nleq2 is addressed in the new version of libroadrunner-deps)
…o that it considers the condition in which no steady state is reached.
…plugins)

- Identified and corrected memory leaks in using RRStringArrayPtr, RRCDataPtr, and RRVectorPtr.
- Implemented unique_ptr for RRVector.
…erent-results-on-mac-m1s

Fixing the issue with getting different results on mac m1s
Move to numpy 2 and Python 3.13
…ak_of_auto2000_plugin

fix: resolve memory leaks in auto2000 plugin
Update getFullJacobian, getReducedJacobian to handle reactions between species in different compartments of differing volumes. Affects getEigenValues() results.
* Use MacOS13
* Use latest dependencies.
* Fix installed swig 4.2 on ubuntu 24.
(But also update the savedState_windows.rr file, since I could update that one.)
@luciansmith luciansmith merged commit a391b28 into release Jan 31, 2025
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4 participants