fix: ParetoSmooth is not compatible with Turing 0.29

.github/workflows/models.yml

@@ -44,6 +44,5 @@ jobs:
       - uses: julia-actions/cache@v1
       - name: Test ${{ matrix.jl-file }}
         run: |
-          cd turing
-          julia --project=. -e 'using Pkg; Pkg.instantiate()'
-          julia --project=. ${{ matrix.jl-file }}
+          julia --project=turing -e 'using Pkg; Pkg.instantiate()'
+          julia --project=turing turing/${{ matrix.jl-file }}

flake.nix

@@ -39,7 +39,10 @@
             julia
           ];
 
-          inherit (self.checks.${system}.pre-commit-check) shellHook;
+          shellHook = ''
+            export JULIA_PROJECT="turing"
+            ${self.checks.${system}.pre-commit-check.shellHook}
+          '';
         };
         packages.default = pkgs.stdenvNoCC.mkDerivation rec {
           name = "slides";

turing/04-ordinal_regression-esoph.jl

@@ -4,6 +4,7 @@ using CSV
 using DataFrames
 using LinearAlgebra
 using CategoricalArrays
+using DataFrames: transform!
 
 # reproducibility
 using Random: seed!

turing/13-model_comparison-roaches.jl

@@ -1,3 +1,10 @@
+# FIXME: ParetoSmooth is not compatible with Turing 0.29
+using Pkg
+Pkg.compat("Turing", "0.22")
+Pkg.compat("Bijectors", "0.10")
+Pkg.compat("StatsBase", "0.33")
+Pkg.add("ParetoSmooth")
+
 using Turing
 using CSV
 using DataFrames

turing/Project.toml

@@ -5,7 +5,6 @@ CategoricalArrays = "324d7699-5711-5eae-9e2f-1d82baa6b597"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02"
 PDMats = "90014a1f-27ba-587c-ab20-58faa44d9150"
-ParetoSmooth = "a68b5a21-f429-434e-8bfa-46b447300aac"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
 TransformVariables = "84d833dd-6860-57f9-a1a7-6da5db126cff"
@@ -18,7 +17,6 @@ CategoricalArrays = "0.10"
 DataFrames = "1"
 LazyArrays = "1"
 PDMats = "0.11"
-ParetoSmooth = "0.7"
 StatsBase = "0.34"
 StatsFuns = "1"
 TransformVariables = "0.8"