DO NOT MERGE call blitzgseas geneset libraries

[xzhou82]

Description

Checklist

Check each task that has been performed or verified to be not applicable.

• Tests: added and/or passed unit and integration tests, or N/A
• Todos: commented or documented, or N/A
• Notable Changes: updated release.txt, prefixed a commit message with "fix:" or "feat:", added to an internal tracking document, or N/A

[karishma-gangwani]

@robinpaul85 please disable p-value cutoff in gsea temporarily for validation/testing.

[karishma-gangwani]

I am not seeing title cases for ORA menu when 1 group is selected.

Resolved in other PR

[xzhou82]

if this fetches remote data

[xzhou82]

HOLD OFF merging this pr wait till gdc release is done
(or change to feature toggle)
because the blitz.enrichr.get_library may not work in gdc env and may break pp there

[robinpaul85]

Now filter cutoffs and blitzgsea genesets are behind the serverconfig flag: gsea_test. add serverconfig flag: “gsea_test” to "true" in serverconfig.features.

[karishma-gangwani]

thanks @robinpaul85 I am unable to download the GSEA table. can you look into this?

[karishma-gangwani]

@robinpaul85 run wilcoxon on DE, submit GSEA analysis, then switch to edgeR add confounding factors. Now I can't run GSEA again because the option is no longer visible under DE controls.

[robinpaul85]

thanks @robinpaul85 I am unable to download the GSEA table. can you look into this?

Done

[karishma-gangwani]

@robinpaul85 run wilcoxon on DE, submit GSEA analysis, then switch to edgeR add confounding factors. Now I can't run GSEA again because the option is no longer visible under DE controls.

This will be handled in a separate pr as not a breaking issue.