Spine Chart Dashboard

This project is an interactive Dash application for visualizing spinal cord morphometric metrics and normative modeling results across age, sex, and spinal level.

It includes:

• Data parsing and preprocessing pipeline
• Multi-site harmonization using ComBat
• Normative modeling using GAMs
• Interactive dashboard for visualization

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Installation

1. Clone the repository

git clone https://github.com/spinalcordtoolbox/spinechart.git
cd spinechart

2. Checkout the correct branch

git checkout ly/initial_dashboard

3. Create a virtual environment

python -m venv spinechart
source spinechart/bin/activate # macOS/Linux
spinechart\Scripts\activate # Windows

4. Install the requirements

pip -r requirements.txt

Usage

To run the dahsboard

python app.py

Then open http://127.0.0.1:8050/