EXP: update sig manifest default rebuilding behavior for v5.
#3074
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Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## start_v5 #3074 +/- ##
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+ Coverage 86.55% 86.57% +0.02%
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Files 136 136
Lines 15819 15827 +8
Branches 2717 2719 +2
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+ Hits 13692 13703 +11
+ Misses 1816 1812 -4
- Partials 311 312 +1
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…o v5_sig_manifest
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Apr 12, 2024
This PR refactors code to eliminate any internal dependencies on the `compute` command or codebase, in preparation for removing `sourmash compute` in v5.0, per #1286. Specifically, this PR: * shifts common sketching code from `src/sourmash/command_compute.py` to `src/sourmash/command_sketch.py`; * refactors three tests that were still using `sourmash compute` to use `sourmash sketch` instead. No functionality is altered or adjusted in this PR; it's all just code refactoring. The next step for #1286 would maybe be adjust the code and the tests to respect the `--v4` and `--v5` flags (as used in #3072 / #3074). The actual compute code and command wouldn't be removed until after a 5.0 release, I think.
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NOTE: PR into #3072
This PR changes the default behavior of
sig manifestfor sourmash v5 to, by default, not rebuild the manifest for collections.This is also further exploration of the v4/v5 cli version fixtures in #3072.
sourmash sig manifestto not regenerate a manifest by default #2034