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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.4k 584

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 218 190

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 157 29

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    58 12

  5. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    HTML 32 10

  6. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 29 24

Repositories

Showing 10 of 56 repositories
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake’s past year of commit activity
    Python 2,402 MIT 584 1,102 (1 issue needs help) 99 Updated Mar 12, 2025
  • snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    snakemake/snakemake-executor-plugin-slurm’s past year of commit activity
    Python 29 MIT 24 29 5 Updated Mar 12, 2025
  • snakemake-executor-plugin-aws-batch Public

    A Snakemake executor plugin for AWS Batch

    snakemake/snakemake-executor-plugin-aws-batch’s past year of commit activity
    Python 6 MIT 4 5 2 Updated Mar 12, 2025
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers’s past year of commit activity
    Python 218 190 23 29 Updated Mar 12, 2025
  • snakemake-storage-plugin-apd Public

    Snakemake storage plugin for use with the LHCb apd package

    snakemake/snakemake-storage-plugin-apd’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 12, 2025
  • snakemake-storage-plugin-xrootd Public

    A Snakemake storage plugin for handling input and output via XRootD

    snakemake/snakemake-storage-plugin-xrootd’s past year of commit activity
    Python 0 MIT 3 2 0 Updated Mar 12, 2025
  • snakedeploy Public

    deploy a snakemake pipeline directly from version control (under development)

    snakemake/snakedeploy’s past year of commit activity
    Python 23 MPL-2.0 9 12 (1 issue needs help) 3 Updated Mar 12, 2025
  • mastodon-release-post-action Public

    GitHub action to facilitate posting release notes on Mastodon

    snakemake/mastodon-release-post-action’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 12, 2025
  • snakemake-interface-logger-plugins Public
    snakemake/snakemake-interface-logger-plugins’s past year of commit activity
    Python 2 0 0 0 Updated Mar 12, 2025
  • snakemake-interface-storage-plugins Public

    This package provides a stable interface for interactions between Snakemake and its storage plugins.

    snakemake/snakemake-interface-storage-plugins’s past year of commit activity
    Python 2 MIT 7 4 1 Updated Mar 12, 2025
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