Merge pull request #94 from sct-pipeline/crop

Increase the dilation used for cropping
sct-pipeline · Jan 7, 2021 · d73bced · d73bced
2 parents cc77cb1 + ad90b20
commit d73bced
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/process_data.sh b/process_data.sh
@@ -185,7 +185,7 @@ for r_coef in ${R_COEFS[@]}; do
 
     # dilate labelled segmentation (for cropping)
     file_label_dil=${file_label_r_t}_dil
-    sct_maths -i ${file_label_r_t}.nii.gz -dilate 15 -shape cube -o ${file_label_dil}.nii.gz
+    sct_maths -i ${file_label_r_t}.nii.gz -dilate 45 -shape cube -o ${file_label_dil}.nii.gz
     # crop image
     sct_crop_image -i ${file_r_t}.nii.gz -m ${file_label_dil}.nii.gz
     # remove the non-cropped transformed image