Try updating example paper workflows

.github/workflows/build_docs.yml

@@ -23,7 +23,7 @@ jobs:
   build:
     runs-on: ubuntu-22.04
     container:
-      image: ghcr.io/scientificcomputing/fenics-gmsh:2023-08-16
+      image: ghcr.io/scientificcomputing/fenics-gmsh:2024-02-19
 
     env:
       # Directory that will be published on github pages
@@ -38,10 +38,9 @@ jobs:
       - name: Build docs
         run: jupyter book build -W .
 
-
       - name: Cache
         id: cache
-        uses: actions/cache@v3
+        uses: actions/cache@v4
         with:
           path: |
             ~/.cache/pip
@@ -57,7 +56,7 @@ jobs:
         run: jupyter book build .
 
       - name: Upload artifact
-        uses: actions/upload-pages-artifact@v2
+        uses: actions/upload-pages-artifact@v3
         with:
           path: ${{ env.PUBLISH_DIR }}
 
@@ -78,7 +77,6 @@ jobs:
       - name: Setup Pages
         uses: actions/configure-pages@v3
 
-
       - name: Deploy to GitHub Pages
         id: deployment
-        uses: actions/deploy-pages@v2
+        uses: actions/deploy-pages@v4

.github/workflows/docker-image.yml

@@ -6,9 +6,9 @@
 name: Create and publish a Docker image
 
 on:
+  pull_request:
+    branches: ["main"]
   push:
-    branches:
-      - "!*"
     tags:
       - "v*"
 
@@ -25,29 +25,41 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Set up QEMU
-        uses: docker/setup-qemu-action@v2
+        uses: docker/setup-qemu-action@v3
 
       - name: Set up Docker Buildx
-        uses: docker/setup-buildx-action@v2
+        uses: docker/setup-buildx-action@v3
 
       - name: Log in to the Container registry
-        uses: docker/login-action@v2
+        uses: docker/login-action@v3
         with:
           registry: ${{ env.REGISTRY }}
           username: ${{ github.actor }}
           password: ${{ secrets.GITHUB_TOKEN }}
 
       - name: Extract metadata (tags, labels) for Docker
         id: meta
-        uses: docker/metadata-action@98669ae865ea3cffbcbaa878cf57c20bbf1c6c38
+        uses: docker/metadata-action@v5
         with:
           images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
 
-      - name: Build and push Docker image
-        uses: docker/build-push-action@v3
+      - name: Build local docker image
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          push: false
+          load: true
+          platforms: linux/amd64
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}
+          file: docker/Dockerfile
+
+      - name: Build and push Docker image (on tagged version)
+        if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
+        uses: docker/build-push-action@v5
         with:
           context: .
           push: true

.github/workflows/reproduce_results.yml

@@ -6,12 +6,12 @@ on:
     branches: ["main"]
   pull_request:
     branches: ["main"]
-
+  schedule:
+    - cron: "30 9 * * 1"
     # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
   workflow_call:
 
-
 jobs:
   run:
     runs-on: ubuntu-22.04
@@ -23,7 +23,7 @@ jobs:
 
       - name: Cache
         id: cache
-        uses: actions/cache@v3
+        uses: actions/cache@v4
         with:
           path: |
             ~/.cache/pip
@@ -48,7 +48,7 @@ jobs:
 
       - name: Upload artifact
         if: always()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           path: |
             ./data/mesh

docker/Dockerfile

@@ -1,4 +1,4 @@
-FROM ghcr.io/scientificcomputing/fenics-gmsh:2023-08-16
+FROM ghcr.io/scientificcomputing/fenics-gmsh:2024-02-19
 
 ARG REPO_BRANCH="main"
 

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "my-fenics-paper"
-version = "0.3.0"
+version = "0.4.0"
 dependencies = [
     "h5py==3.9.0",                # Pin to same version that is allready installed in the docker image
     "cardiac-geometries>=0.11.0",