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[Blocked] Add mag path to zarr streaming datasource-properties.json #8518

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@fm3 fm3 commented Apr 9, 2025

In outbound zarr streaming routes, each mag now reports its path in the datasource-properties.json. The supplied path is relative to the dataset root and uses the scalar mag literal form if possible.

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@fm3 fm3 self-assigned this Apr 9, 2025
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coderabbitai bot commented Apr 9, 2025

📝 Walkthrough

Walkthrough

The change updates the ZarrStreamingController.scala file by modifying the construction of MagLocator instances within the convertLayerToZarrLayer method. Specifically, both SegmentationLayer and DataLayer now receive a new string parameter that combines the layer name and the result of x.toMagLiteral(allowScalar = true). The other parameters remain unchanged, and there are no alterations to any exported or public entities.

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File Summary
webknossos-datastore/app/.../ZarrStreamingController.scala Updated the instantiation of MagLocator in the convertLayerToZarrLayer method for both SegmentationLayer and DataLayer, adding a concatenated identifier using the layer name and x.toMagLiteral(allowScalar = true). The fifth parameter remains unchanged as None.

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Reviewing files that changed from the base of the PR and between 18da17f and 7fee77b.

📒 Files selected for processing (1)
  • webknossos-datastore/app/com/scalableminds/webknossos/datastore/controllers/ZarrStreamingController.scala (2 hunks)
🧰 Additional context used
🧬 Code Graph Analysis (1)
webknossos-datastore/app/com/scalableminds/webknossos/datastore/controllers/ZarrStreamingController.scala (2)
webknossos-datastore/app/com/scalableminds/webknossos/datastore/dataformats/MagLocator.scala (2)
  • MagLocator (9-14)
  • MagLocator (16-18)
webknossos-datastore/app/com/scalableminds/webknossos/datastore/datareaders/AxisOrder.scala (3)
  • AxisOrder (8-24)
  • AxisOrder (26-47)
  • cAdditionalxyz (45-45)
🔇 Additional comments (2)
webknossos-datastore/app/com/scalableminds/webknossos/datastore/controllers/ZarrStreamingController.scala (2)

171-178: Well-implemented path addition to MagLocator

The addition of path information to the MagLocator instances for SegmentationLayer enhances the outbound zarr streaming routes by including relative paths in the datasource-properties.json file. Using allowScalar = true in the toMagLiteral method ensures concise representation when possible, which is a nice optimization.


195-202: Consistent implementation for DataLayer

The same path construction logic is properly implemented for DataLayer, ensuring consistency across different layer types. The path format (layerName/magLiteral) provides a clear and intuitive relative path structure.


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@fm3 fm3 marked this pull request as ready for review April 10, 2025 05:53
@fm3 fm3 requested a review from normanrz April 10, 2025 05:53
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Does this work for both datasets and annotations?

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fm3 commented Apr 10, 2025

Yes, this function is used by both variants. I installed https://streamingmagpath.webknossos.xyz so you can test it

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Ok. This currently breaks the current version of wklibs. I'm afraid we need to delay this change.

@fm3 fm3 changed the title Add mag path to zarr streaming datasource-properties.json [Blocked] Add mag path to zarr streaming datasource-properties.json Apr 17, 2025
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