version 0.5.0 release - CRAN version

Merge branch 'develop'

# Conflicts:
#	DESCRIPTION
#	cleanup
#	cleanup.win
#	src/Makevars.win
#	src/include/models.hpp
#	src/include/models.hpp.bak

.Rbuildignore

@@ -1,14 +1,15 @@
-cleanup*
-^\.travis\.yml$
-^.*\.Rproj$
+^idealstan\.Rproj$
 ^\.Rproj\.user$
-^chunks$
-README*
-package_test*
-cran-comments.md
-NEWS.md
+^\.travis\.yml$
+package_test.html
+package_test.Rmd
+DE 2018.Rdata
 LICENSE.txt
-^\.DS_Store
-^\.Rmd
-bfg-1*
+delaware_example.R
+package_test.nb.html
+package_test_files
+render_vignettes.R
+vignette_output.txt
+cran-comments.md
+
 

.gitignore

@@ -1,3 +1,5 @@
+doc
+Meta
 .Rproj.user
 .Rhistory
 .RData
@@ -8,7 +10,8 @@ src/*.so
 src/*.dll
 *.rds
 package_test.nb.html
-inst/doc
+package_test_files/*
+irt_standard_tst*
 bfg-1.12.16.jar
 src-i386
 src-x64

.travis.yml

@@ -1,10 +1,51 @@
-# R for travis: see documentation at https://docs.travis-ci.com/user/languages/r
-
-language: R
-sudo: false
+language: r
+sudo: true
 cache: packages
-r:
-  - 3.3.1
-r_build_args: --no-build-vignettes --no-manual --no-resave-data
-r_check_args: --no-build-vignettes --no-manual
-warnings_are_errors: false
+
+
+matrix:
+  include:
+    - os: linux
+      dist: trusty
+      r: release
+      r_binary_packages:
+        - devtools
+      addons:
+        apt:
+          sources:
+            - ubuntu-toolchain-r-test
+          packages:
+            - g++-7
+      env:
+        - MATRIX_EVAL="CC=gcc-7 && CXX=g++-7"
+    - os: linux
+      dist: trusty
+      r: devel
+      r_binary_packages:
+        - devtools
+      addons:
+        apt:
+          sources:
+            - ubuntu-toolchain-r-test
+          packages:
+            - g++-7
+      env:
+        - MATRIX_EVAL="CC=gcc-7 && CXX=g++-7"
+    - os: osx
+      fortran: false
+      osx_image: xcode10
+      r: release
+
+
+before_install:
+  - mkdir -p ~/.R/
+  - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then echo "CXX14 = g++-7 -fPIC" >> ~/.R/Makevars; fi
+  - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then echo "CXX14FLAGS = -mtune=native -march=native -Wno-unused-variable -Wno-unused-function -Wno-unused-local-typedefs -Wno-ignored-attributes -Wno-deprecated-declarations -Wno-attributes -O3" >> ~/.R/Makevars; fi
+  - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then echo "CXX14 = clang++ -arch x86_64 -ftemplate-depth-256" >> ~/.R/Makevars; fi
+  - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then echo "CXX14FLAGS = -O3 -mtune=native -march=native -Wno-unused-variable -Wno-unused-function  -Wno-unknown-pragmas" >> ~/.R/Makevars; fi
+  - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then echo "CC = clang" >> ~/.R/Makevars; fi
+  - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then sudo tlmgr install inconsolata; fi
+
+after_failure:
+  - cat /home/travis/build/saudiwin/idealstan/idealstan.Rcheck/00install.out
+

DESCRIPTION

@@ -1,39 +1,48 @@
 Package: idealstan
 Type: Package
-Title: Bayesian IRT Ideal Point Models with 'Stan'
-Version: 0.2.9.2
-Date: 2018-10-16
+Title: Generalized IRT Ideal Point Models with 'Stan'
+Version: 0.5.0
+Date: 2018-10-27
 Authors@R: c(person("Robert","Kubinec", role = c("aut","cre"),
-                     email = "rmk7xy@virginia.edu"),
+                     email = "rmk7@nyu.edu"),
               person("Jonah", "Gabry", role = "ctb"),
               person("Ben", "Goodrich", role = "ctb"),
               person("Trustees of Columbia University",role='cph'))
 BugReports: https://github.com/saudiwin/idealstan/issues
-Description: Offers item-response theory (IRT) ideal-point scaling/dimension reduction methods that incorporate additional response categories and missing/censored values, including absences and abstentions, for roll call voting data (or any other kind of binary or ordinal item-response theory data). Full and approximate Bayesian inference is done via the 'Stan' engine (www.mc-stan.org). 
+Description: Offers item-response theory (IRT) ideal-point estimation for binary, ordinal, counts and continuous responses with time-varying and missing-data inference. Full and approximate Bayesian sampling with 'Stan' (www.mc-stan.org). 
 License: GPL
-Depends:
+Depends: 
+    methods,
     R (>= 3.4.0),
-    Rcpp (>= 0.12.7)
-Imports:
+    Rcpp (>= 0.12.18)
+Imports: 
     rstan (>= 2.18.1),
-    rstantools (>= 1.1.0),
-    methods (>= 3.3.1),
+    rstantools (>= 1.5.1),
     dplyr,
     tidyr,
     stringr,
     bayesplot,
     ggplot2,
     lazyeval,
     rlang,
-    shinystan
+    shinystan,
+    gghighlight,
+    forcats,
+    ggrepel
 Suggests:
     pscl,
     loo,
-    knitr,
-    rmarkdown
-LinkingTo: StanHeaders (>= 2.18.0), rstan (>= 2.18.1), BH (>= 1.66), Rcpp
-    (>= 0.12.7), RcppEigen (>= 0.3.2.9.0)
-RoxygenNote: 6.0.1
-LazyData: false
-VignetteBuilder: knitr
+    lubridate,
+    R.rsp
+LinkingTo: 
+    StanHeaders (>= 2.18.0), 
+    rstan (>= 2.18.1), 
+    BH (>= 1.66), 
+    Rcpp (>= 0.12.7), 
+    RcppEigen (>= 0.3.2.9.0)
+Encoding: UTF-8
+LazyData: true
+NeedsCompilation: yes
 SystemRequirements: GNU make
+VignetteBuilder: R.rsp
+RoxygenNote: 6.1.0

NAMESPACE

@@ -1,13 +1,16 @@
 # Generated by roxygen2: do not edit by hand
 
+export(derive_chain)
 export(id_estimate)
 export(id_extract)
-export(id_log_lik)
 export(id_make)
 export(id_plot)
 export(id_plot_all_hist)
 export(id_plot_compare)
+export(id_plot_cov)
 export(id_plot_legis)
+export(id_plot_legis_dyn)
+export(id_plot_legis_var)
 export(id_plot_ppc)
 export(id_plot_rhats)
 export(id_plot_sims)
@@ -17,37 +20,50 @@ export(id_sim_gen)
 export(id_sim_resid)
 export(id_sim_rmse)
 export(launch_shinystan)
+export(stan_trace)
 exportClasses(idealdata)
 exportClasses(idealstan)
 exportMethods(id_extract)
-exportMethods(id_log_lik)
 exportMethods(id_plot)
 exportMethods(id_plot_ppc)
 exportMethods(id_post_pred)
 exportMethods(launch_shinystan)
+exportMethods(stan_trace)
 exportMethods(summary)
 import(Rcpp)
 import(bayesplot)
 import(dplyr)
 import(ggplot2)
+import(ggrepel)
 import(lazyeval)
 import(methods)
 import(rstan)
 import(rstantools)
+importFrom(forcats,fct_relevel)
+importFrom(gghighlight,gghighlight)
+importFrom(rlang,as_quosure)
 importFrom(rlang,parse_quosure)
+importFrom(rstan,sampling)
 importFrom(shinystan,as.shinystan)
 importFrom(shinystan,launch_shinystan)
 importFrom(stats,dbinom)
+importFrom(stats,dnorm)
+importFrom(stats,dpois)
 importFrom(stats,median)
+importFrom(stats,model.matrix)
 importFrom(stats,plogis)
+importFrom(stats,qlogis)
 importFrom(stats,quantile)
+importFrom(stats,relevel)
 importFrom(stats,reorder)
 importFrom(stats,rexp)
 importFrom(stats,rlnorm)
 importFrom(stats,rnorm)
+importFrom(stats,rpois)
 importFrom(stats,runif)
 importFrom(stats,sd)
 importFrom(stats,step)
 importFrom(tidyr,gather)
 importFrom(tidyr,spread)
+importFrom(utils,person)
 useDynLib(idealstan, .registration = TRUE)

NEWS.md

@@ -1,8 +1,15 @@
+#Release v0.5.0
+* New models for Poisson, ordinal-graded response, Normal and Log-normal outcomes.
+* Time-varying ideal point processes: random-walks and auto-regressive priors.
+* Time-varying plot functions for ideal points.
+* Hierarchical covariates for ideal points and item/bill discrimination.
+* Switched from matrix data input to long data frames.
+
 #Release v0.2.9.1
-Fixed bugs in `id_extract` and `id_make` functions.
+* Fixed bugs in `id_extract` and `id_make` functions.
 
 #Release v0.2.9
-Fixed a bug in the ideal point plot function, and also in the `auto_id` option in `id_estimate`.
+* Fixed a bug in the ideal point plot function, and also in the `auto_id` option in `id_estimate`.
 
 # Release v0.2.2
 * First release on CRAN.