update and run pre-commit

.github/workflows/python_build.yml

@@ -6,8 +6,8 @@ on:
   pull_request:
     branches: [ main ]
   create:
-    branches: [main]
-    tags: ['**']
+    branches: [ main ]
+    tags: [ '**' ]
   schedule:
     - cron: "0 4 * * MON"
 

.github/workflows/python_tests.yml

@@ -6,8 +6,8 @@ on:
   pull_request:
     branches: [ main ]
   create:
-    branches: [main]
-    tags: ['**']
+    branches: [ main ]
+    tags: [ '**' ]
   schedule:
     - cron: "0 4 * * MON"
 
@@ -52,7 +52,7 @@ jobs:
         pip install -e .
 
     - name: Install MNE-Python (development version)
-      if: "matrix.mne-version == 'mne-main'"
+      if: matrix.mne-version == 'mne-main'
       run: |
         pip install git+https://github.com/mne-tools/mne-python.git@main
 
@@ -61,12 +61,10 @@ jobs:
         mne sys_info
 
     - name: Check formatting
-      if: "matrix.platform == 'ubuntu-latest'"
+      if: matrix.platform == 'ubuntu-latest'
       run: |
         flake8 --docstring-convention numpy .
         check-manifest .
-        black . --check
-        isort . --check
         pre-commit run --all-files || ( git status --short ; git diff ; exit 1 )
 
     - name: Test with pytest
@@ -79,7 +77,7 @@ jobs:
         make -C docs/ html
 
     - name: Upload artifacts
-      if: "matrix.platform == 'ubuntu-latest'"
+      if: matrix.platform == 'ubuntu-latest'
       uses: actions/upload-artifact@v3
       with:
         name: docs-artifact

.pre-commit-config.yaml

@@ -2,7 +2,7 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v4.5.0
     hooks:
     -   id: trailing-whitespace
     -   id: end-of-file-fixer
@@ -17,11 +17,12 @@ repos:
     hooks:
     -   id: isort
 -   repo: https://github.com/psf/black
-    rev: "23.7.0"
+    rev: "23.10.1"
     hooks:
     -   id: black
+        exclude: pyprep/_version.py
 -   repo: https://github.com/pycqa/flake8
-    rev: "6.0.0"
+    rev: "6.1.0"
     hooks:
     -   id: flake8
         additional_dependencies: [flake8-docstrings]

.readthedocs.yml

@@ -20,4 +20,3 @@ python:
    - method: pip
      path: .
    - requirements: requirements-dev.txt
-

pyprep/__init__.py

@@ -5,4 +5,5 @@
 from pyprep.reference import Reference  # noqa: F401
 
 from . import _version
-__version__ = _version.get_versions()['version']
+
+__version__ = _version.get_versions()["version"]

pyproject.toml

@@ -1,5 +1,12 @@
 [tool.black]
-exclude = "matprep_artifacts"
+extend-exclude = '''
+# A regex preceded with ^/ will apply only to files and directories
+# in the root of the project.
+(
+  matprep_artifacts
+  pyprep/_version.py
+)
+'''
 
 [build-system]
 requires = ["setuptools", "versioneer[toml]"]

setup.cfg

@@ -73,6 +73,7 @@ profile=black
 skip_glob =
   examples/*
   matprep_artifacts/*
+  pyprep/_version.py
 
 [coverage:run]
 omit =

setup.py

@@ -2,9 +2,8 @@
 
 import sys
 
-from setuptools import setup
-
 import versioneer
+from setuptools import setup
 
 # Give setuptools a hint to complain if it's too old a version
 # 30.3.0 allows us to put most metadata in setup.cfg