Skip to content

Pull requests: samtools/hts-specs

New pull request New
30 Open 336 Closed
30 Open 336 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Add encryptionScheme parameter to htsget
#808 opened Feb 3, 2025 by brainstorm Loading…
2
Copy the tag type text from SAM spec to SAMtags (PR #804) sam sam-tags
#804 opened Jan 7, 2025 by jkbonfield Loading…
1
5
Clarify the name tokeniser uncomp_len calculation (PR #803) cram
#803 opened Jan 7, 2025 by jkbonfield Loading…
1
7
Explicitly permit eg N+m in MM tag (PR#799) sam sam-tags
#799 opened Oct 28, 2024 by jkbonfield Loading…
1
4
fix discrepancy of empty bed files bed
#775 opened Jun 28, 2024 by kloetzl Loading…
5
Add ID subfield to VCF v4.3 test file's structured header vcf
#773 opened Jun 18, 2024 by jmarshall Loading…
1
@d-cameron
1
Add SAM recommendation of MAPQ=0 for unmapped reads sam
#753 opened Jan 29, 2024 by jkbonfield Loading…
1
@jmarshall
6
Adding AEAD support as new encryption method crypt4gh
#736 opened Jul 22, 2023 by silverdaz Loading…
5
Allow for UTF-8 field values in header regular expression sam
#726 opened May 12, 2023 by jmarshall Loading…
1
11
Document the ambiguity of 1-base long seq with QUAL * sam
#724 opened May 2, 2023 by jkbonfield Loading…
1
@jmarshall
1
Fix typos (refget) refget
#700 opened Feb 2, 2023 by jkbonfield Loading…
Remove "top strand" phrase from MM tag description. sam sam-tags
#668 opened Aug 31, 2022 by jkbonfield Loading…
1
@jmarshall
1
Define optional HTTP 426 response for requests for index files htsget
#665 opened Aug 3, 2022 by jmarshall Loading…
Clarify MI for identifying source molecule strand sam sam-tags
#633 opened Mar 2, 2022 by nh13 Loading…
@jmarshall
15
Clarification of empty vector representation vcf
#617 opened Dec 16, 2021 by pd3 Loading…
@d-cameron
3
Phred scale clarifications sam vcf
#579 opened Jun 16, 2021 by jkbonfield Loading…
1
19
strawman attempt at adding array of booleans vcf
#537 opened Dec 17, 2020 by yfarjoun Loading…
2 tasks
2
document convention for "QC squeezing" in population VCF vcf
#527 opened Sep 7, 2020 by mlin Loading…
1
Cramv4 cram
#502 opened May 28, 2020 by jkbonfield Loading…
2
htsget: add samples query parameter, principally to select subset of VCF columns htsget
#430 opened Jul 10, 2019 by mlin Loading…
5
Sample ID and filter update vcf
#414 opened May 30, 2019 by yfarjoun Loading… VCF v4.4
8
New section describing familial PEDIGREE headers vcf
#413 opened May 29, 2019 by jmarshall Loading…
13
[DRAFT] Cache control for re-using previously-downloaded headers htsget
#325 opened Jul 12, 2018 by jmarshall • Draft
3
Add splitting BAM index to spec sam
#321 opened Jun 5, 2018 by tomwhite Loading…
44
Clarify Number=G tags in INFO as discussed in #272 vcf
#309 opened May 4, 2018 by pd3 Loading…
1
ProTip! Add no:assignee to see everything that’s not assigned.