Fix a bug in genotype filtering #11
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| name: Windows/MinGW-W64 CI | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: windows-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Set up MSYS2 MinGW-W64 | |
| uses: msys2/setup-msys2@v2 | |
| with: | |
| msystem: mingw64 | |
| update: false | |
| install: >- | |
| mingw-w64-x86_64-toolchain | |
| mingw-w64-x86_64-autotools | |
| mingw-w64-x86_64-curl | |
| mingw-w64-x86_64-libdeflate | |
| mingw-w64-x86_64-tools-git | |
| mingw-w64-x86_64-zlib | |
| mingw-w64-x86_64-bzip2 | |
| mingw-w64-x86_64-xz | |
| - name: Clone htslib | |
| shell: msys2 {0} | |
| run: | | |
| export PATH="$PATH:/mingw64/bin:/c/Program Files/Git/bin" | |
| export MSYSTEM=MINGW64 | |
| htslib_pr=`git log -2 --format='%s' | sed -n 's/.*htslib#\([0-9]*\).*/\1/p'` | |
| .ci_helpers/clone ${GITHUB_REPOSITORY_OWNER} htslib htslib ${GITHUB_HEAD_REF:-$GITHUB_REF_NAME} $htslib_pr | |
| pushd . | |
| cd htslib | |
| autoreconf -i | |
| popd | |
| - name: Compile bcftools | |
| shell: msys2 {0} | |
| run: | | |
| export PATH="$PATH:/mingw64/bin:/c/Program Files/Git/bin" | |
| export MSYSTEM=MINGW64 | |
| autoheader | |
| autoconf -Wno-syntax | |
| ./configure --enable-werror | |
| make -j4 | |
| - name: Check bcftools | |
| shell: msys2 {0} | |
| run: | | |
| export PATH="$PATH:/mingw64/bin:/c/Program Files/Git/bin" | |
| export MSYSTEM=MINGW64 | |
| make check | |