SACCHARIS v2.0.5 release

This is a public release being uploaded to bioconda.

This release is still a BETA and is not guaranteed to work on all systems. In particular, it won't work natively on windows systems easily right now and mac systems with apple silicon require workrounds (e.g. rosetta compatibility layer) to work properly, this beta release is primarily targeted for use on linux and WSL installs from bioconda.

v2.0.5 release notes:

• Updated URLs within the saccharis.update_db utility (DatabaseDownload.py) to reflect the V14 HMMs from dbCAN (released 2025-08-26).

SACCHARIS v2.0.4 release

This is a public release being uploaded to bioconda.

This release is still a BETA and is not guaranteed to work on all systems. In particular, it won't work natively on windows systems easily right now and mac systems with apple silicon require workrounds (e.g. rosetta compatibility layer) to work properly, this beta release is primarily targeted for use on linux and WSL installs from bioconda.

v2.0.4 release notes:

• Fix error when creating "All Cazyme" trees when downloading sequence data caused sending JGI sequence identifiers to NCBI.

SACCHARIS v2.0.3 release

This is a public release being uploaded to bioconda.

This release is still a BETA and is not guaranteed to work on all systems. In particular, it won't work natively on windows systems easily right now and mac systems with apple silicon require workrounds (e.g. rosetta compatibility layer) to work properly, this beta release is primarily targeted for use on linux and WSL installs from bioconda.

v2.0.3 release notes:

• Fix saccharis.config command crashing when directory argument not supplied by user.
• Reduce NCBI query delay retry multiplier as the rate of increase causes issues with very large trees timing out on NCBI download failures.

SACCHARIS v2.0.2 release

This is a public release being uploaded to bioconda.

This release is still a BETA and is not guaranteed to work on all systems. In particular, it won't work natively on windows systems easily right now and mac systems with apple silicon require workrounds (e.g. rosetta compatibility layer) to work properly, this beta release is primarily targeted for use on linux and WSL installs from bioconda.

v2.0.2 release notes:

• Fix https issue causing cazy.org downloads to fail.
• Fix dbcan database downloads.
• Fix issue with multiple FASTA files not being loaded correctly when they share duplicated IDs.
• Fix issue with moving database/user folders storing data incorrectly that caused databases to be downloaded again and potential loss of user data.
• Remove wget dependency.
• Improved logging to debug purposes.
• Various other small bugfixes.

SACCHARIS v2.0.1.dev21 beta release

This is a beta release being uploaded to bioconda to fix a critical bug within dbCAN database access.

This release is a BETA and is not guaranteed to work on all systems. In particular, it won't work on windows systems easily right now and mac systems with apple silicon do not work properly, this beta release is intended for use on linux and WSL installs from bioconda.

SACCHARIS v2.0.1 beta release

This is a beta release being uploaded to bioconda to fix a critical bug within dbCAN database access.

This release is a BETA and is not guaranteed to work on all systems. In particular, it won't work on windows systems easily right now and mac systems with apple silicon do not work properly, this beta release is intended for use on linux and WSL installs from bioconda.

SACCHARIS v2.0.0.dev21 beta release

This is a beta release being uploaded to bioconda to fix a critical bug when launching the GUI, and also adds support for raxml-ng with both CLI and GUI usage options. The rsaccharis package must be installed and set up separately (for now) for automatic rendering.

This release is a BETA and is not guaranteed to work on all systems. In particular, it won't work on windows systems easily right now and mac systems with apple silicon do not work properly, this beta release is intended for use on linux and WSL installs from bioconda. Additionally, some features for the full 2.0 release are still in progress.

SACCHARIS v2.0.0.dev20 beta release

This is a beta release being uploaded to bioconda to fix critical bugs of improper JSON output and adds more logging for debugging purposes. This release also adds an automatic rendering feature using the rsaccharis package, which is off by default since rsaccharis must be installed separately (for now). This release is a BETA and is not guaranteed to work on all systems. In particular, it won't work on windows systems easily right now and mac systems with apple silicon do not work properly, this beta release is intended for use on linux and WSL installs from bioconda. Additionally, some features for the full 2.0 release are still in progress.

SACCHARIS v2.0.0.dev19 beta release

This is a beta release being uploaded to bioconda to fix some critical bugs and . This release is a BETA and is not guaranteed to work on all systems. In particular, it won't work on windows systems easily right now and mac systems with apple silicon do not work properly, this beta release is intended for use on linux and WSL installs from bioconda. Additionally, some features for the full 2.0 release are still in progress.

SACCHARIS v2.0.0.dev18 alpha release

This is the first release being uploaded to bioconda to test installation from the bioconda repository. This release is an ALPHA and is not guaranteed to work on all systems. In particular, it won't work on windows systems for now and mac is untested, this alpha release is intended for testing on linux and WSL installs from bioconda.