SNARTomo

SNARTomo is our set of scripts for on-the-fly tomographic reconstruction.

The name is derived from the programs that were originally run by it:

We since added other functionalities, such as MotionCor2, IMOD, PACE-tomo, and others, but the name remains.

Recent news

2025-06-19 – BASH wrapper for snartomo-heatwave run without '.py' extension in case of competing Python in $PATH
2024-11-29 – AreTomo2 and MotionCor3 are compatible, AreTomo3 untested

Name		Name	Last commit message	Last commit date
Latest commit History 236 Commits
docs		docs
gui		gui
LICENSE		LICENSE
README.md		README.md
argumentparser_dynamic.sh		argumentparser_dynamic.sh
ctfbyts.py		ctfbyts.py
dose_discriminator.py		dose_discriminator.py
gpu_resources.bash		gpu_resources.bash
snartomo-animate		snartomo-animate
snartomo-classic		snartomo-classic
snartomo-eermerge		snartomo-eermerge
snartomo-framecalc		snartomo-framecalc
snartomo-heatwave		snartomo-heatwave
snartomo-heatwave.py		snartomo-heatwave.py
snartomo-live-simulate		snartomo-live-simulate
snartomo-pace		snartomo-pace
snartomo-shared.bash		snartomo-shared.bash
snartomo-template		snartomo-template
snartomo.bashrc.template		snartomo.bashrc.template
sort_residuals.py		sort_residuals.py