new version

Dockerfile

@@ -1,82 +1,40 @@
-FROM rocker/verse:3.3.3
+FROM rocker/verse:3.4.0
 MAINTAINER "Carl Boettiger" [email protected]
 
-ENV GDAL_VERSION 2.1.3
-ENV GEOS_VERSION 3.5.1
-ENV LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
-
-
 RUN apt-get update \
-##  && apt-get build-dep -y -o APT::Get::Build-Dep-Automatic=true libgdal-dev \
   && apt-get install -y --no-install-recommends \
     lbzip2 \
-    ## dev packages
-    libdap-dev \
-    libexpat1-dev \
     libfftw3-dev \
-    libfreexl-dev \
-#  libgeos-dev \ # Need 3.5, this is 3.3
+    libgdal-dev \
+    libgeos-dev \
     libgsl0-dev \
+    libgl1-mesa-dev \
     libglu1-mesa-dev \
     libhdf4-alt-dev \
     libhdf5-dev \
+    libjq-dev \
     liblwgeom-dev \
-    libkml-dev \
-    libnetcdf-dev \
     libproj-dev \
+    libprotobuf-dev \
+    libnetcdf-dev \
     libsqlite3-dev \
     libssl-dev \
-    libtcl8.5 \
-    libtk8.5 \
-    libtiff5-dev \
     libudunits2-dev \
-    libxerces-c-dev \
-   ## runtime packages
     netcdf-bin \
+    protobuf-compiler \
+    tk-dev \
     unixodbc-dev \
-  && wget http://download.osgeo.org/gdal/${GDAL_VERSION}/gdal-${GDAL_VERSION}.tar.gz \
-  && tar -xf gdal-${GDAL_VERSION}.tar.gz \
-  && wget http://download.osgeo.org/geos/geos-${GEOS_VERSION}.tar.bz2 \
-  && tar -xf geos-${GEOS_VERSION}.tar.bz2 \
-## Install dependencies of gdal-$GDAL_VERSION
-## && echo "deb-src http://deb.debian.org/debian jessie main" >> /etc/apt/sources.list \
-## Install libgeos \
-  && cd /geos* \
-  && ./configure \
-  && make \
-  && make install \
-## Configure options loosely based on homebrew gdal2 https://github.com/OSGeo/homebrew-osgeo4mac/blob/master/Formula/gdal2.rb
-  && cd /gdal* \
-  && ./configure \
-    --with-curl \
-    --with-dods-root=/usr \
-    --with-freexl \
-    --with-geos \
-    --with-geotiff \
-    --with-hdf4 \
-    --with-hdf5=/usr/lib/x86_64-linux-gnu/hdf5/serial \
-    --with-libjson-c \
-    --with-netcdf \
-    --with-odbc \
-    ##
-    --without-grass \
-    --without-libgrass \
-  && make \
-  && make install \
-  && cd .. \
-  ## Cleanup gdal & geos installation
-  && rm -rf gdal-* geos-* \
-## Install R packages labeled "core" in Spatial taskview 
   && install2.r --error \
-    ## from CRAN
-    DCluster \
     RColorBrewer \
     RandomFields \
+    RNetCDF \
     classInt \
     deldir \
     gstat \
     lidR \
+    mapdata \
     maptools \
+    mapview \
     ncdf4 \
     proj4 \
     raster \
@@ -88,7 +46,7 @@ RUN apt-get update \
     spacetime \
     spatstat \
     spdep \
-    splancs \
     geoR \
+    geosphere \
     ## from bioconductor
     && R -e "BiocInstaller::biocLite('rhdf5')"