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Update conda install with gamma.
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petebunting committed Jan 29, 2021
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4 changes: 2 additions & 2 deletions au-eoed-dev-gamma/Dockerfile
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Expand Up @@ -22,12 +22,12 @@ RUN wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86

# Use python 3.7, update conda base and install AU-EOED software stack
RUN conda install --yes -c conda-forge python=3.7; sync && conda update --yes -n base conda; sync && \
conda install --yes -c au-eoed -c conda-forge python=3.7 eodatadown arcsi rsgislib pb_process_tools sen1-ard-gamma compute-job-recorder scikit-learn scikit-image scikit-optimize scikit-plot scikit-fuzzy bayesian-optimization matplotlib pandas statsmodels h5py scipy rasterio shapely networkx sqlalchemy pycurl xgboost catboost lightgbm tpot seaborn ml_tooling cartopy numba pip sphinx elevation rtree luigi tqdm weasyprint jinja2 keras keras-preprocessing pytables parallel plotly bokeh pygal jupyterlab psutil pysal libpysal esda; sync \
conda install --yes -c au-eoed -c conda-forge python=3.7 eodatadown arcsi rsgislib pb_process_tools sen1-ard-gamma pysl4land compute-job-recorder scikit-learn=0.23.1 scikit-image scikit-optimize scikit-plot scikit-fuzzy bayesian-optimization matplotlib pandas statsmodels h5py scipy rasterio shapely networkx sqlalchemy pycurl xgboost catboost lightgbm tpot seaborn ml_tooling cartopy numba pip sphinx elevation rtree luigi tqdm weasyprint jinja2 keras keras-preprocessing pytables parallel plotly bokeh pygal jupyterlab psutil pysal libpysal esda pyyaml netcdf4 xarray rasterstats; sync \
&& chmod +x /opt/miniconda/bin/*; sync \
&& conda clean --all -y; sync \
&& conda clean -tipsy && sync

RUN pip install pyod fiona geopandas gsutil cvxopt dropbox && sync
RUN pip install pyod cvxopt gsutil feather-format openpyxl SALib alphashape && sync

# set gdal and proj data paths
ENV GDAL_DATA=/opt/miniconda/share/gdal
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