Added deco code

deco/.coveragerc

@@ -0,0 +1,28 @@
+# .coveragerc to control coverage.py
+[run]
+branch = True
+source = deco
+# omit = bad_file.py
+
+[paths]
+source =
+    src/
+    */site-packages/
+
+[report]
+# Regexes for lines to exclude from consideration
+exclude_lines =
+    # Have to re-enable the standard pragma
+    pragma: no cover
+
+    # Don't complain about missing debug-only code:
+    def __repr__
+    if self\.debug
+
+    # Don't complain if tests don't hit defensive assertion code:
+    raise AssertionError
+    raise NotImplementedError
+
+    # Don't complain if non-runnable code isn't run:
+    if 0:
+    if __name__ == .__main__.:

deco/.gitignore

@@ -0,0 +1,50 @@
+# Temporary and binary files
+*~
+*.py[cod]
+*.so
+*.cfg
+!.isort.cfg
+!setup.cfg
+*.orig
+*.log
+*.pot
+__pycache__/*
+.cache/*
+.*.swp
+*/.ipynb_checkpoints/*
+.DS_Store
+
+# Project files
+.ropeproject
+.project
+.pydevproject
+.settings
+.idea
+tags
+
+# Package files
+*.egg
+*.eggs/
+.installed.cfg
+*.egg-info
+
+# Unittest and coverage
+htmlcov/*
+.coverage
+.tox
+junit.xml
+coverage.xml
+.pytest_cache/
+
+# Build and docs folder/files
+build/*
+dist/*
+sdist/*
+docs/api/*
+docs/_rst/*
+docs/_build/*
+cover/*
+MANIFEST
+
+# Per-project virtualenvs
+.venv*/

deco/.isort.cfg

@@ -0,0 +1,10 @@
+[settings]
+line_length=88
+indent='    '
+skip=.tox,.venv,build,dist
+known_standard_library=setuptools,pkg_resources
+known_test=pytest
+known_first_party=deco
+sections=FUTURE,STDLIB,COMPAT,TEST,THIRDPARTY,FIRSTPARTY,LOCALFOLDER
+default_section=THIRDPARTY
+multi_line_output=3

deco/.pre-commit-config.yaml

@@ -0,0 +1,25 @@
+exclude: '^docs/conf.py'
+
+repos:
+- repo: git://github.com/pre-commit/pre-commit-hooks
+  rev: v2.2.3
+  hooks:
+  - id: trailing-whitespace
+  - id: check-added-large-files
+  - id: check-ast
+  - id: check-json
+  - id: check-merge-conflict
+  - id: check-xml
+  - id: check-yaml
+  - id: debug-statements
+  - id: end-of-file-fixer
+  - id: requirements-txt-fixer
+  - id: mixed-line-ending
+    args: ['--fix=no']
+  - id: flake8
+    args: ['--max-line-length=88']  # default of Black
+
+- repo: https://github.com/pre-commit/mirrors-isort
+  rev: v4.3.4
+  hooks:
+  - id: isort

deco/CHANGELOG.rst

@@ -0,0 +1,10 @@
+=========
+Changelog
+=========
+
+Version 0.1
+===========
+
+- Feature A added
+- FIX: nasty bug #1729 fixed
+- add your changes here!

deco/LICENSE.txt

@@ -0,0 +1,21 @@
+The MIT License (MIT)
+
+Copyright (c) 2020 Author
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

deco/README.md

@@ -0,0 +1,112 @@
+# deco
+
+Deco is a new approach for reducing bias.  
+
+## Description . 
+
+In our approach, we treat debiasing as an optimization problem and
+apply optimization procedures to parts of an already trained machine
+learning model.  For instance, given a trained neural network, we
+apply optimization to set the weights on one or more layers of the
+network such that the weights reduce some combination of bias measures
+without sacrificing performance.
+
+<img src='https://miro.medium.com/max/1400/1*0hTrFIGMWxKRcTWOnjL9Dw.gif'>
+
+## Installation
+
+In order to set up the necessary environment:
+
+1. create an environment `deco` with the help of [conda],
+   ```
+   conda env create -f environment.yaml
+   ```
+2. activate the new environment with
+   ```
+   conda activate deco
+   ```
+3. install `deco` with:
+   ```
+   python setup.py install # or `develop`
+   ```
+
+Optional and needed only once after `git clone`:
+
+4. install several [pre-commit] git hooks with:
+   ```
+   pre-commit install
+   ```
+   and checkout the configuration under `.pre-commit-config.yaml`.
+   The `-n, --no-verify` flag of `git commit` can be used to deactivate pre-commit hooks temporarily.
+
+5. install [nbstripout] git hooks to remove the output cells of committed notebooks with:
+   ```
+   nbstripout --install --attributes notebooks/.gitattributes
+   ```
+   This is useful to avoid large diffs due to plots in your notebooks.
+   A simple `nbstripout --uninstall` will revert these changes.
+
+
+Then take a look into the `scripts` and `notebooks` folders.
+
+## Dependency Management & Reproducibility
+
+1. Always keep your abstract (unpinned) dependencies updated in `environment.yaml` and eventually
+   in `setup.cfg` if you want to ship and install your package via `pip` later on.
+2. Create concrete dependencies as `environment.lock.yaml` for the exact reproduction of your
+   environment with:
+   ```
+   conda env export -n deco -f environment.lock.yaml
+   ```
+   For multi-OS development, consider using `--no-builds` during the export.
+3. Update your current environment with respect to a new `environment.lock.yaml` using:
+   ```
+   conda env update -f environment.lock.yaml --prune
+   ```
+## Project Organization
+
+```
+├── AUTHORS.rst             <- List of developers and maintainers.
+├── CHANGELOG.rst           <- Changelog to keep track of new features and fixes.
+├── LICENSE.txt             <- License as chosen on the command-line.
+├── README.md               <- The top-level README for developers.
+├── configs                 <- Directory for configurations of model & application.
+├── data
+│   ├── external            <- Data from third party sources.
+│   ├── interim             <- Intermediate data that has been transformed.
+│   ├── processed           <- The final, canonical data sets for modeling.
+│   └── raw                 <- The original, immutable data dump.
+├── docs                    <- Directory for Sphinx documentation in rst or md.
+├── environment.yaml        <- The conda environment file for reproducibility.
+├── models                  <- Trained and serialized models, model predictions,
+│                              or model summaries.
+├── notebooks               <- Jupyter notebooks. Naming convention is a number (for
+│                              ordering), the creator's initials and a description,
+│                              e.g. `1.0-fw-initial-data-exploration`.
+├── references              <- Data dictionaries, manuals, and all other materials.
+├── reports                 <- Generated analysis as HTML, PDF, LaTeX, etc.
+│   └── figures             <- Generated plots and figures for reports.
+├── scripts                 <- Analysis and production scripts which import the
+│                              actual PYTHON_PKG, e.g. train_model.
+├── setup.cfg               <- Declarative configuration of your project.
+├── setup.py                <- Use `python setup.py develop` to install for development or
+|                              or create a distribution with `python setup.py bdist_wheel`.
+├── src
+│   └── deco                <- Actual Python package where the main functionality goes.
+├── tests                   <- Unit tests which can be run with `py.test`.
+├── .coveragerc             <- Configuration for coverage reports of unit tests.
+├── .isort.cfg              <- Configuration for git hook that sorts imports.
+└── .pre-commit-config.yaml <- Configuration of pre-commit git hooks.
+```
+
+## Note
+
+This project has been set up using PyScaffold 3.2.3 and the [dsproject extension] 0.4.
+For details and usage information on PyScaffold see https://pyscaffold.org/.
+
+[conda]: https://docs.conda.io/
+[pre-commit]: https://pre-commit.com/
+[Jupyter]: https://jupyter.org/
+[nbstripout]: https://github.com/kynan/nbstripout
+[Google style]: http://google.github.io/styleguide/pyguide.html#38-comments-and-docstrings
+[dsproject extension]: https://github.com/pyscaffold/pyscaffoldext-dsproject

deco/data/.gitignore

@@ -0,0 +1,8 @@
+# Ignore everything in this directory
+*
+# Except this file and .gitignore in sub directories
+!.gitignore
+!raw
+!external
+!preprocessed
+!interim

deco/data/external/.gitignore

@@ -0,0 +1,4 @@
+# Ignore everything in this directory
+*
+# Except this file
+!.gitignore

deco/data/interim/.gitignore

@@ -0,0 +1,4 @@
+# Ignore everything in this directory
+*
+# Except this file
+!.gitignore

deco/data/preprocessed/.gitignore

@@ -0,0 +1,4 @@
+# Ignore everything in this directory
+*
+# Except this file
+!.gitignore

deco/data/raw/.gitignore

@@ -0,0 +1,4 @@
+# Ignore everything in this directory
+*
+# Except this file
+!.gitignore