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#227: Fix TYPE and other simple related entity names
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- Down to 13 fails, 6 warnings for no data
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MRichards99 committed May 20, 2021
1 parent 61ff4a4 commit 940a829
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Showing 2 changed files with 14 additions and 12 deletions.
24 changes: 13 additions & 11 deletions datagateway_api/common/database/models.py
Original file line number Diff line number Diff line change
Expand Up @@ -343,7 +343,7 @@ class DATACOLLECTIONPARAMETER(Base, EntityHelper, metaclass=EntityMeta):
primaryjoin="DATACOLLECTIONPARAMETER.dataCollectionID == DATACOLLECTION.id",
backref="dataCollectionParameters",
)
PARAMETERTYPE = relationship(
TYPE = relationship(
"PARAMETERTYPE",
primaryjoin="DATACOLLECTIONPARAMETER.parameterTypeID == PARAMETERTYPE.id",
backref="dataCollectionParameters",
Expand Down Expand Up @@ -437,7 +437,7 @@ class DATAFILEPARAMETER(Base, EntityHelper, metaclass=EntityMeta):
primaryjoin="DATAFILEPARAMETER.datafileID == DATAFILE.id",
backref="datafileParameters",
)
PARAMETERTYPE = relationship(
TYPE = relationship(
"PARAMETERTYPE",
primaryjoin="DATAFILEPARAMETER.parameterTypeID == PARAMETERTYPE.id",
backref="datafileParameters",
Expand Down Expand Up @@ -478,7 +478,7 @@ class DATASET(Base, EntityHelper, metaclass=EntityMeta):
SAMPLE = relationship(
"SAMPLE", primaryjoin="DATASET.sampleID == SAMPLE.id", backref="datasets",
)
DATASETTYPE = relationship(
TYPE = relationship(
"DATASETTYPE",
primaryjoin="DATASET.typeID == DATASETTYPE.id",
backref="datasets",
Expand Down Expand Up @@ -514,7 +514,7 @@ class DATASETPARAMETER(Base, EntityHelper, metaclass=EntityMeta):
primaryjoin="DATASETPARAMETER.datasetID == DATASET.id",
backref="datasetParameters",
)
PARAMETERTYPE = relationship(
TYPE = relationship(
"PARAMETERTYPE",
primaryjoin="DATASETPARAMETER.parameterTypeID == PARAMETERTYPE.id",
backref="datasetParameters",
Expand Down Expand Up @@ -662,7 +662,7 @@ class INVESTIGATION(Base, EntityHelper, metaclass=EntityMeta):
primaryjoin="INVESTIGATION.facilityID == FACILITY.id",
backref="investigations",
)
INVESTIGATIONTYPE = relationship(
TYPE = relationship(
"INVESTIGATIONTYPE",
primaryjoin="INVESTIGATION.typeID == INVESTIGATIONTYPE.id",
backref="investigations",
Expand Down Expand Up @@ -763,7 +763,7 @@ class INVESTIGATIONPARAMETER(Base, EntityHelper, metaclass=EntityMeta):
primaryjoin="INVESTIGATIONPARAMETER.investigationID == INVESTIGATION.id",
backref="investigationParameters",
)
PARAMETERTYPE = relationship(
TYPE = relationship(
"PARAMETERTYPE",
primaryjoin="INVESTIGATIONPARAMETER.parameterTypeID == PARAMETERTYPE.id",
backref="investigationParameters",
Expand Down Expand Up @@ -948,7 +948,7 @@ class PERMISSIBLESTRINGVALUE(Base, EntityHelper, metaclass=EntityMeta):
"PARAMETERTYPE_ID", ForeignKey("PARAMETERTYPE.ID"), nullable=False, index=True,
)

PARAMETERTYPE = relationship(
TYPE = relationship(
"PARAMETERTYPE",
primaryjoin="PERMISSIBLESTRINGVALUE.parameterTypeID == PARAMETERTYPE.id",
backref="permissibleStringValues",
Expand Down Expand Up @@ -1075,7 +1075,7 @@ class SAMPLE(Base, EntityHelper, metaclass=EntityMeta):
primaryjoin="SAMPLE.investigationID == INVESTIGATION.id",
backref="samples",
)
SAMPLETYPE = relationship(
TYPE = relationship(
"SAMPLETYPE",
primaryjoin="SAMPLE.sampleTypeID == SAMPLETYPE.id",
backref="samples",
Expand Down Expand Up @@ -1104,7 +1104,7 @@ class SAMPLEPARAMETER(Base, EntityHelper, metaclass=EntityMeta):
"PARAMETER_TYPE_ID", ForeignKey("PARAMETERTYPE.ID"), nullable=False, index=True,
)

PARAMETERTYPE = relationship(
TYPE = relationship(
"PARAMETERTYPE",
primaryjoin="SAMPLEPARAMETER.parameterTypeID == PARAMETERTYPE.id",
backref="sampleParameters",
Expand Down Expand Up @@ -1180,7 +1180,9 @@ class USERGROUP(Base, EntityHelper, metaclass=EntityMeta):
userID = Column("USER_ID", ForeignKey("USER_.ID"), nullable=False)

GROUPING = relationship(
"GROUPING", primaryjoin="USERGROUP.groupID == GROUPING.id", backref="grouping",
"GROUPING",
primaryjoin="USERGROUP.groupID == GROUPING.id",
backref="userGroups",
)
USER = relationship(
"USER", primaryjoin="USERGROUP.userID == USER.id", backref="userGroups",
Expand Down Expand Up @@ -1240,7 +1242,7 @@ class STUDY(Base, EntityHelper, metaclass=EntityMeta):

class SAMPLETYPE(Base, EntityHelper, metaclass=EntityMeta):
__tablename__ = "SAMPLETYPE"
__singularfieldname = "sampleType"
__singularfieldname__ = "sampleType"
__pluralfieldname__ = "sampleTypes"
__table_args__ = (
Index("UNQ_SAMPLETYPE_0", "FACILITY_ID", "NAME", "MOLECULARFORMULA"),
Expand Down
2 changes: 1 addition & 1 deletion test/db/test_entity_relationships.py
Original file line number Diff line number Diff line change
Expand Up @@ -450,7 +450,7 @@ def test_valid_related_entites(
relationship,
):
test_response = flask_test_app_db.get(
f'/{endpoint_type}?include="{input_include_field}"',
f'/{endpoint_type}?include="{input_include_field}"&limit=3000',
headers=valid_db_credentials_header,
)
print(test_response)
Expand Down

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