Skip to content

v0.2.0
Compare
Choose a tag to compare
@danilexn danilexn released this 03 Oct 14:23
· 18 commits to main since this release
v0.2.0
18a48bb
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.

Changelog

[0.2.0] - 2024-10-03

Added

  • New flowcell_map command to convert basecalls from a whole flow cell into barcodes-to-spatial coordinates maps
  • Support for bcl-convert in addition to bcl2fastq for demultiplexing
  • Added support for the Axio microscope in image_stitch command
  • Implemented a more efficient tiling and stitching process for image preprocessing
  • Added dnaio dependency for faster FASTQ parsing

Changed

  • Updated barcode_preprocessing to handle larger datasets more efficiently
  • Improved memory management in various parts of the pipeline
  • Refactored pairwise_aligner for better performance and reliability
  • Updated segment to use OpenST-specific model directory
  • Modified transcript_assign to handle edge cases better
  • Improved error handling and logging across the package
  • Updated Python version requirement to >3.8 and <3.12

Fixed & Improved

  • Corrected issues with coordinate systems in several functions
  • Enhanced documentation
  • Optimized performance for large dataset processing
Assets 2
Loading