version 0.1.3

• added support for large bowtie indices

• adjusted BED output to include 5p and 3p arms

• removed cryptic warning regarding precursors with 0 read mappings

• deprecated -w option

• added description for extract_miRNAs.pl

• updated manual installation in README

• hardcoded perl binary for install.pl to /usr/bin/perl

version 0.1.2

• fixed uninitialized value errors/warnings

• rephrased available species message

• fixed Travis CI (still used to use ~/.bash_profile rather than ~/.bashrc)

version 0.1.1

• improved detection of installation directory & Rfam indices

• instead of fractions, percantages are used in read statistics

• several minor improvements to the MRD output format

• negative repeat count warnings have been removed

• HTML output does not contain (now dead) links to (old) Rajewsky lab webpage
  anymore

• install.pl now modifies ~/.bashrc rather than ~/.bash_profile

• miRDeep2.pl now handles changed RNAfold output

version 0.1.0

• fixed bug resulting in negative repeat count due to too small -l value

• braces in regex were escaped [deprecated by upstream]

• miRDeep2 was licensed under GPL v3

• the documentation was improved and converted to Markdown

• minor improvements and code cleanup

• the tutorial is now run via Travis CI on Linux & Mac to test the build

• Sean Eddys squid libray was removed from the repository

version 0.0.92

v0.9.2

Fixed curl https bug, fixed wget recognition bug

version 0.0.91

v0.0.91

option -c removed, not working

version 0.0.9

v0.0.9

version 0.0.9

version 0.0.8

v0.0.8

version 0.0.8

version 0.0.7

v0.0.7

version 0.0.7

version 0.0.6

v0.0.6

version 0.0.6