Refactoring/fixing zarr-pyhton v3 incompatibilities in xarray datatrees #16244
Annotations
4 errors and 11 warnings
Run tests:
xarray/tests/test_backends_datatree.py#L568
TestZarrDatatreeIO.test_open_datatree_specific_group
RuntimeWarning: Failed to open Zarr store with consolidated metadata, but successfully read with non-consolidated metadata. This is typically much slower for opening a dataset. To silence this warning, consider:
1. Consolidating metadata in this existing store with zarr.consolidate_metadata().
2. Explicitly setting consolidated=False, to avoid trying to read consolidate metadata, or
3. Explicitly setting consolidated=True, to raise an error in this case instead of falling back to try reading non-consolidated metadata.
|
Run tests:
xarray/tests/test_backends_datatree.py#L634
TestZarrDatatreeIO.test_write_inherited_coords_false
RuntimeWarning: Failed to open Zarr store with consolidated metadata, but successfully read with non-consolidated metadata. This is typically much slower for opening a dataset. To silence this warning, consider:
1. Consolidating metadata in this existing store with zarr.consolidate_metadata().
2. Explicitly setting consolidated=False, to avoid trying to read consolidate metadata, or
3. Explicitly setting consolidated=True, to raise an error in this case instead of falling back to try reading non-consolidated metadata.
|
Run tests:
xarray/tests/test_backends_datatree.py#L653
TestZarrDatatreeIO.test_write_inherited_coords_true
RuntimeWarning: Failed to open Zarr store with consolidated metadata, but successfully read with non-consolidated metadata. This is typically much slower for opening a dataset. To silence this warning, consider:
1. Consolidating metadata in this existing store with zarr.consolidate_metadata().
2. Explicitly setting consolidated=False, to avoid trying to read consolidate metadata, or
3. Explicitly setting consolidated=True, to raise an error in this case instead of falling back to try reading non-consolidated metadata.
|
Run tests
Process completed with exit code 1.
|
Run tests:
Users/runner/micromamba/envs/xarray-tests/lib/python3.12/site-packages/_pytest/unraisableexception.py#L85
Exception ignored in: <function CachingFileManager.__del__ at 0x1287bfce0>
Traceback (most recent call last):
File "/Users/runner/work/xarray/xarray/xarray/backends/file_manager.py", line 255, in __del__
warnings.warn(
RuntimeWarning: deallocating CachingFileManager(<class 'h5netcdf.core.File'>, <_io.BufferedReader name='/var/folders/2s/h6hvv9ps03xgz_krkkstvq_r0000gn/T/tmpi797xvq4/temp-57.nc'>, mode='r', kwargs={'invalid_netcdf': None, 'decode_vlen_strings': True, 'driver': None}, manager_id='43645622-309f-4d82-a1db-abdb941d4d27'), but file is not already closed. This may indicate a bug.
|
Run tests:
Users/runner/micromamba/envs/xarray-tests/lib/python3.12/site-packages/_pytest/unraisableexception.py#L85
Exception ignored in: <function CachingFileManager.__del__ at 0x1287bfce0>
Traceback (most recent call last):
File "/Users/runner/work/xarray/xarray/xarray/backends/file_manager.py", line 255, in __del__
warnings.warn(
RuntimeWarning: deallocating CachingFileManager(<class 'h5netcdf.core.File'>, <_io.BufferedReader name='/var/folders/2s/h6hvv9ps03xgz_krkkstvq_r0000gn/T/tmpi797xvq4/temp-57.nc'>, mode='r', kwargs={'invalid_netcdf': None, 'decode_vlen_strings': True, 'driver': None}, manager_id='43645622-309f-4d82-a1db-abdb941d4d27'), but file is not already closed. This may indicate a bug.
|
Run tests:
xarray/core/duck_array_ops.py#L234
invalid value encountered in cast
|
Run tests:
Users/runner/micromamba/envs/xarray-tests/lib/python3.12/site-packages/array_api_strict/_data_type_functions.py#L45
invalid value encountered in cast
|
Run tests:
xarray/core/duck_array_ops.py#L234
invalid value encountered in cast
|
Run tests:
Users/runner/micromamba/envs/xarray-tests/lib/python3.12/site-packages/array_api_strict/_data_type_functions.py#L45
invalid value encountered in cast
|
Run tests:
Users/runner/micromamba/envs/xarray-tests/lib/python3.12/site-packages/zarr/core/group.py#L2824
Object at foo is not recognized as a component of a Zarr hierarchy.
|
Run tests:
Users/runner/micromamba/envs/xarray-tests/lib/python3.12/site-packages/zarr/core/group.py#L2824
Object at x is not recognized as a component of a Zarr hierarchy.
|
Run tests:
Users/runner/micromamba/envs/xarray-tests/lib/python3.12/site-packages/zarr/core/group.py#L2824
Object at x is not recognized as a component of a Zarr hierarchy.
|
Run tests:
Users/runner/micromamba/envs/xarray-tests/lib/python3.12/site-packages/zarr/core/group.py#L2824
Object at foo is not recognized as a component of a Zarr hierarchy.
|
Restore cached hypothesis directory
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release.
A separate `actions/cache/restore` step should be used instead.
See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
|
Loading