Add Claude Flow V3 configuration and behavioral guidelines

.agentic-qe/config.yaml

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+# Agentic QE v3 Configuration
+# Generated by aqe init
+# 2026-02-19T17:38:27.216Z
+#
+# NOTE: Your customizations are PRESERVED when you run "aqe init" again.
+# You do NOT need to re-run "aqe init" after editing this file - changes
+# take effect immediately. The following settings are merged on reinstall:
+#   - domains.enabled (custom domains like visual-accessibility)
+#   - domains.disabled
+#   - learning.enabled
+#   - hooks.* preferences
+#   - workers.enabled
+#   - agents.maxConcurrent and defaultTimeout
+
+version: "3.6.13"
+
+project:
+  name: "cf-devpod"
+  root: "/home/user/cf-devpod"
+  type: "single"
+
+learning:
+  enabled: true
+  embeddingModel: "transformer"
+  hnswConfig:
+    M: 8
+    efConstruction: 100
+    efSearch: 50
+  qualityThreshold: 0.5
+  promotionThreshold: 2
+  pretrainedPatterns: true
+
+routing:
+  mode: "ml"
+  confidenceThreshold: 0.7
+  feedbackEnabled: true
+
+workers:
+  enabled:
+    - "pattern-consolidator"
+  intervals:
+    pattern-consolidator: 1800000
+    coverage-gap-scanner: 3600000
+    flaky-test-detector: 7200000
+    routing-accuracy-monitor: 900000
+  maxConcurrent: 2
+  daemonAutoStart: true
+
+hooks:
+  claudeCode: true
+  preCommit: false
+  ciIntegration: false
+
+skills:
+  install: true
+  installV2: true
+  installV3: true
+  overwrite: false
+
+domains:
+  enabled:
+    - "test-generation"
+    - "test-execution"
+    - "coverage-analysis"
+    - "quality-assessment"
+    - "defect-intelligence"
+    - "requirements-validation"
+    - "code-intelligence"
+    - "security-compliance"
+    - "contract-testing"
+    - "visual-accessibility"
+    - "chaos-resilience"
+    - "learning-optimization"
+    - "enterprise-integration"
+  disabled:
+
+agents:
+  maxConcurrent: 5
+  defaultTimeout: 60000

.agentic-qe/data/learning-config.json

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+{
+  "embeddingModel": "transformer",
+  "hnswConfig": {
+    "M": 8,
+    "efConstruction": 100,
+    "efSearch": 50
+  },
+  "qualityThreshold": 0.5,
+  "promotionThreshold": 2,
+  "databasePath": "/home/user/cf-devpod/.agentic-qe/data/memory.db",
+  "hnswIndexPath": "/home/user/cf-devpod/.agentic-qe/data/hnsw/index.bin",
+  "initialized": "2026-02-19T17:38:24.021Z"
+}

.agentic-qe/data/patterns/index.json

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+{
+  "version": "3.6.13",
+  "domains": [],
+  "loadedAt": "2026-02-19T17:38:24.022Z"
+}

.agentic-qe/workers/daemon.pid

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+2575

.agentic-qe/workers/pattern-consolidator.json

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+{
+  "name": "pattern-consolidator",
+  "enabled": true,
+  "interval": 1800000,
+  "projectRoot": "/home/user/cf-devpod",
+  "dataDir": "/home/user/cf-devpod/.agentic-qe/data",
+  "createdAt": "2026-02-19T17:38:25.645Z"
+}

.agentic-qe/workers/registry.json

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+{
+  "version": "3.6.13",
+  "maxConcurrent": 2,
+  "workers": {
+    "pattern-consolidator": {
+      "name": "pattern-consolidator",
+      "enabled": true,
+      "interval": 1800000,
+      "lastRun": null,
+      "status": "pending"
+    }
+  },
+  "createdAt": "2026-02-19T17:38:25.645Z",
+  "daemonPid": null
+}

.agentic-qe/workers/start-daemon.cjs

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+#!/usr/bin/env node
+// AQE v3 Worker Daemon Startup Script (cross-platform)
+// Generated by aqe init
+// Starts the MCP server with background workers enabled
+
+const { existsSync, readFileSync, writeFileSync, appendFileSync } = require('fs');
+const { join } = require('path');
+const { spawn } = require('child_process');
+
+const projectRoot = join(__dirname, '..', '..');
+const workersDir = join(projectRoot, '.agentic-qe', 'workers');
+const pidFile = join(workersDir, 'daemon.pid');
+const logFile = join(workersDir, 'daemon.log');
+
+// Check if already running
+if (existsSync(pidFile)) {
+  const pid = parseInt(readFileSync(pidFile, 'utf-8').trim(), 10);
+  try { process.kill(pid, 0); console.log('Daemon already running (PID: ' + pid + ')'); process.exit(0); } catch {}
+}
+
+const ts = new Date().toISOString();
+appendFileSync(logFile, '[' + ts + '] Starting AQE v3 Worker Daemon...\n');
+
+// Find the best way to run aqe-mcp
+const candidates = [
+  join(projectRoot, 'node_modules', '.bin', 'aqe-mcp'),
+  join(projectRoot, 'node_modules', 'agentic-qe', 'v3', 'dist', 'mcp', 'bundle.js'),
+];
+
+let mcpCmd, mcpArgs;
+const binCandidate = candidates.find(c => existsSync(c));
+
+if (binCandidate && binCandidate.endsWith('bundle.js')) {
+  mcpCmd = process.execPath;
+  mcpArgs = [binCandidate];
+} else if (binCandidate) {
+  mcpCmd = binCandidate;
+  mcpArgs = [];
+} else {
+  mcpCmd = process.platform === 'win32' ? 'npx.cmd' : 'npx';
+  mcpArgs = ['--yes', 'agentic-qe', 'mcp'];
+}
+
+appendFileSync(logFile, '[' + ts + '] Using: ' + mcpCmd + ' ' + mcpArgs.join(' ') + '\n');
+
+const env = { ...process.env, AQE_PROJECT_ROOT: projectRoot, AQE_LEARNING_ENABLED: 'true', AQE_WORKERS_ENABLED: 'true', AQE_HTTP_PORT: '0' };
+const child = spawn(mcpCmd, mcpArgs, { cwd: projectRoot, env, detached: true, stdio: ['ignore', 'pipe', 'pipe'] });
+child.stdout.on('data', d => appendFileSync(logFile, d));
+child.stderr.on('data', d => appendFileSync(logFile, d));
+child.unref();
+
+writeFileSync(pidFile, String(child.pid));
+appendFileSync(logFile, '[' + ts + '] Daemon started with PID: ' + child.pid + '\n');
+console.log('AQE v3 Worker Daemon started (PID: ' + child.pid + ')');
+console.log('Log file: ' + logFile);
+console.log('To stop: node ' + join(workersDir, 'stop-daemon.cjs'));

.agentic-qe/workers/stop-daemon.cjs

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+#!/usr/bin/env node
+// AQE v3 Worker Daemon Stop Script (cross-platform)
+// Generated by aqe init
+
+const { existsSync, readFileSync, unlinkSync } = require('fs');
+const { join } = require('path');
+
+const workersDir = join(__dirname);
+const pidFile = join(workersDir, 'daemon.pid');
+
+if (!existsSync(pidFile)) { console.log('No PID file found - daemon may not be running'); process.exit(0); }
+
+const pid = parseInt(readFileSync(pidFile, 'utf-8').trim(), 10);
+try {
+  process.kill(pid, 0); // Check if alive
+  console.log('Stopping daemon (PID: ' + pid + ')...');
+  process.kill(pid, 'SIGTERM');
+  try { unlinkSync(pidFile); } catch {}
+  console.log('Daemon stopped');
+} catch {
+  console.log('Daemon not running (stale PID file)');
+  try { unlinkSync(pidFile); } catch {}
+}