Workflow Templates

Reusable GitHub Actions workflows for Coen Lab projects.

Available Templates

run-and-report.yml

Generic workflow that runs a command, captures output, commits results back to the repo, and uploads artifacts.

Usage

name: My Check
on:
  push:
    branches: [main]
  schedule:
    - cron: "0 3 * * *"
  workflow_dispatch:

jobs:
  check:
    uses: pipcoen/workflow-templates/.github/workflows/run-and-report.yml@main
    with:
      command: "python main.py"
      python-version: "3.12"
      install-command: "pip install -r requirements.txt"
      use-playwright: true
      commit-paths: |
        ci-output.log
        reports/
    secrets:
      env-vars: |
        NOTION_TOKEN=${{ secrets.NOTION_TOKEN }}

Inputs

Input	Default	Description
command	(required)	Shell command to run
python-version	""	Python version (skip if empty)
node-version	""	Node.js version (skip if empty)
use-playwright	false	Install Playwright + Chromium
install-command	""	Dependency install command
commit-paths	ci-output.log	Files to commit back
artifact-paths	ci-output.log	Files to upload as artifacts
commit-message-prefix	CI: output	Auto-commit message prefix
timeout-minutes	30	Job timeout

Secrets

Secret	Description
env-vars	Multi-line KEY=VALUE pairs injected as environment variables