Code & Additional Materials from the T2T Marmoset Project (Hebbar et al. 2026).
Alignments and other data are available here: https://public.gi.ucsc.edu/~pnhebbar/marmoset/sharing/
Connect to UCSC Genome Browser using this: https://public.gi.ucsc.edu/~pnhebbar/marmoset/assemblyHub/hub.txt
Clustering active ASat array sequences from all chromosomes of all 4 assemblies: https://github.com/fedorrik/ClusterSourMash
Tool to get ASat chromosome-specific kmers: https://github.com/fedorrik/seq-specific_kmers
Standard tool for HMM-based ASat annotation: https://github.com/fedorrik/HumAS-HMMER_for_AnVIL