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Issues: percyfal/snakemakelib

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20 Open 29 Closed
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Issues list

star ignores extra references tag: rules type: bug
#49 opened Oct 2, 2015 by percyfal
1
Make javascript library for common functions type: feature
#43 opened Sep 16, 2015 by percyfal 0.1.0
Create summary rule for rpkmforgenes tag: rules
#40 opened Sep 8, 2015 by percyfal 0.1.0
1
Remove all magic initializations of config status: WIP tag: config tag: rules type: feature
#35 opened Sep 1, 2015 by percyfal 0.1.0
Allow for quality control modularity tag: rules
#33 opened Aug 31, 2015 by percyfal 0.1.0
Make configuration routines like emacs lisp tag: config type: discussion type: feature
#31 opened Aug 31, 2015 by percyfal long-term
Reimplement halo pipeline tag: workflows
#30 opened Aug 31, 2015 by percyfal long-term
Modify GATK region rules to include label tag: rules
#29 opened Aug 31, 2015 by percyfal long-term
Write "standalone" command to export used tasks to standalone snakemake file type: feature
#28 opened Aug 31, 2015 by percyfal long-term
Set samples first time targets generator run so that we don't have to re-read sampleinfo file? type: discussion
#27 opened Aug 31, 2015 by percyfal
Test updated chart plotting facilities to see if custom functions can be made obsolete tag: bokeh
#26 opened Aug 31, 2015 by percyfal long-term
Create settings file for each application level type: discussion type: feature
#25 opened Aug 31, 2015 by percyfal long-term
Add REQUIRED_RULES to rule loading type: discussion
#24 opened Aug 31, 2015 by percyfal
cutadapt paired-end rule duplicates parameters with "file:" type: bug
#17 opened Jul 13, 2015 by percyfal 0.1.0
pip install from github fails to install external dependency bokehutils type: bug
#16 opened Jul 11, 2015 by percyfal short-term
Add library for interacting with module system type: feature
#10 opened Jul 8, 2015 by percyfal long-term
Make standalone scripts for collecting results type: feature
#9 opened Jun 23, 2015 by percyfal long-term
Add sphinx rst templates tag: docs type: feature
#8 opened Jun 23, 2015 by percyfal 0.1.0
Make rules independent of snakemakelib package status: WIP type: feature
#7 opened Jun 23, 2015 by percyfal
1
Add configuration option to exclude samples type: feature
#3 opened Apr 24, 2015 by percyfal 0.1.0
@percyfal
1
ProTip! Follow long discussions with comments:>50.