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sdfm

Spatial Disorder Framework Manipulation
(working title)

Basic functionality to deconstruct (metal-organic) frameworks into building blocks, manipulate structures and extract finite molecular clusters.

See the notebook for a limited tutorial.

TODO

template

  • what for nonperiodic structures?

cluster

  • allow option to focus on elements?
  • some easy way to define templates

modify

  • fix dangling bond problem
  • modification reorders blocks, so that repeated identical function calls (swapping blocks) will have a different effect every time..

tools

  • duplicated code

tests

  • where are they

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