1.11
New Features
- [sv leviathan] now also makes BX tags unique when concatenating population groups
- provided as
--bx
option toconcatenate_bam.py
- provided as
- new standalone script
deconvolve_alignments.py
that does the same thing asassign_mi.py
, but also deconvolves theBX
tag into hyphenated form
Fixes
- R logic for properly parsing new
--contigs
option #160
Improvements
- LOTS more guardrails with respect to validations and error handling
- Simplified logic for file type validation and tag management in scripts
- Enhanced error handling for missing input files across multiple scripts
- Updated argument parser configurations for improved user guidance and error handling
- Streamlined output methods across multiple scripts for consistency
PRs
Full Changelog: 1.10.1...1.11