Code

markdups and molcov#210

Code

Merged

pdimens merged 17 commits intomainpdimens/harpy:mainfrom markdups_improvementpdimens/harpy:markdups_improvementCopy head branch name to clipboardFeb 24, 2025

+165-203

Commits

Commits on Feb 21, 2025

• default is 0

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  26a6b89

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• speed up gzipping by using gnu

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  9919593

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• add sequencer for optical dup buffer

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  36747ff

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• better text

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  7f038ea

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• nicer formatting

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  a5dd356

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Commits on Feb 22, 2025

• add wildcard to rule

  pdimens

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  895aef2

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• use pre-binned Counter

  pdimens

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  79699f5

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• much faster mol cov

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  committed
  ac70b4a

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• rm the stupid _Inline folder perl makes

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  6f74ec3

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Commits on Feb 23, 2025

• fix to increment bins between start and end

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  8b2d1d4

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• swap the manual CLI for an intelligent per-sample search

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  924a4a3

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• fix reference to sequencer

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  559186b

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Commits on Feb 24, 2025

• rm unnecessary call to cut

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  857a7d5

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• rash of cli updates

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  b992993

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• better text

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  committed
  8177436

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• fix cli

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  committed
  6796b03

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• fix test call

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  committed
  25532d9

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