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markdups and molcov (#210) #588

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markdups and molcov (#210)

markdups and molcov (#210) #588

Triggered via push February 24, 2025 19:13
@pdimenspdimens
pushed 2579cd5
main
Status Success
Total duration 20m 49s
Artifacts –

tests.yml

on: push
Detect File Changes
3s
Detect File Changes
Rebuild Container
19m 56s
Rebuild Container
demux gen1
2m 19s
demux gen1
preflight
1m 46s
preflight
qc
3m 15s
qc
deconvolve
2m 6s
deconvolve
align BWA
4m 6s
align BWA
align EMA
4m 22s
align EMA
align strobe
3m 24s
align strobe
mpileup
2m 55s
mpileup
freebayes
2m 27s
freebayes
impute
6m 5s
impute
phase
2m 23s
phase
sv leviathan
3m 0s
sv leviathan
sv naibr
3m 18s
sv naibr
simulate variants
3m 16s
simulate variants
simulate linkedreads
10m 58s
simulate linkedreads
assembly
20m 25s
assembly
harpy extras
58s
harpy extras
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17 warnings
harpy extras
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
preflight
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
deconvolve
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
demux gen1
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
phase
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
freebayes
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
mpileup
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
sv leviathan
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
qc
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
simulate variants
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
sv naibr
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
align strobe
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
align BWA
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
impute
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
simulate linkedreads
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
Rebuild Container
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67
assembly
Failed to save: Unable to reserve cache with key micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, another job may be creating this cache. More details: Cache already exists. Scope: refs/heads/main, Key: micromamba-environment--linux-64-args-4f53cda-root-dcc80ee-bin-[object Promise]-file-896cba2a1b2d2fcc1d2292744c46b6e499f33d3532d79db4d2f603a7ff7dee51, Version: ccc0604e33da4d6723bd1bbd0eaf1d3a9a07bc6486e88aa2f6cd3793b9ba4b67