Test Harpy Modules

markdups and molcov #586

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Run time

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Job	Run time
Detect File Changes	4s
deconvolve	1m 41s
align BWA	3m 55s
assembly	7m 33s
Rebuild Container	7m 26s
demux gen1	1m 50s
align EMA	3m 51s
harpy extras	33s
freebayes	2m 13s
impute	5m 44s
sv leviathan	2m 45s
sv naibr	2m 56s
mpileup	2m 37s
phase	1m 54s
preflight	1m 35s
qc	1m 57s
simulate linkedreads	7m 24s
simulate variants	3m 1s
align strobe	3m 9s
	1h 2m 8s