Test Harpy Modules

more 2.0 milestones #573

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Run time

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Job	Run time
Detect File Changes	7s
Rebuild Container	2m 37s
deconvolve	1m 44s
assembly	18m 24s
align BWA	4m 42s
align EMA	4m 48s
harpy extras	37s
demux gen1	1m 44s
freebayes	2m 9s
impute	6m 1s
sv leviathan	2m 34s
mpileup	2m 43s
sv naibr	3m 8s
phase	1m 58s
preflight	1m 20s
qc	2m 42s
simulate linkedreads	12m 33s
simulate variants	2m 59s
align strobe	4m 7s
	1h 16m 57s