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fixed case where match on not independent state was not incrementing …#71

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dudzicp wants to merge 3 commits intooxpig:masterfrom
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Open

fixed case where match on not independent state was not incrementing …#71
dudzicp wants to merge 3 commits intooxpig:masterfrom
dudzicp:master

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@dudzicp dudzicp commented Oct 26, 2023

…insertions

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dudzicp commented Oct 26, 2023

to test this, consider sequence: QVQLQESGPGLVKPSTLSLTCTVCGVSINSGDYWGSRIRQHPGKGEWIAYMDSGNTYYKESLQSVTMSIDCKNQFCLKLSVNAADTAVYYCARAFRPYNSRPFDYRGQGTLVTVSS numbered to kabat scheme

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dudzicp commented Oct 26, 2023

this case was handled properly:

X X X X I X X
m m m d m ..
1 2 3 - 4 ..

this was not:

 X X X I  I X X
 m m m d  m ..
 1 2 3 - 3A ..

With existing logic both cases would be numbered as in first case

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