Update file reading for content modification

[kweav]

Change file reading from doc_path to dest_file before processing to attempt to fix error identified while testing this branch

While testing the changes in this branch, I encountered a new issue with the readLines function. Comparing to the original function, I see a different variable was used.

How I tested this branch:
-- used this branch specifically for ottrpal within the base_ottr dockerfile, building it and pushing it to dockerhub with the testBC tag.
-- Used that image on a few repos and called ottrpal borrow_chapter to test rendering/borrowing a chapter

Error I observed:
-- the error acted like the file didn't exist. But that seems to be because it was looking for a local file which indeed did not exist.

How this should fix it:
-- updating it to look at the full path, not a local path, trying to mirror the original code (https://github.com/jhudsl/cow/blob/be112c8bb9c6ddb9c3b5668a7dd2faa1042281e9/R/borrow_chapter.R#L108)

[kweav]

This is working, but there are header warnings on the top of the borrowed content:

Course:

Quarto website:

@acoffman @carriewright11 any idea what I need to do to suppress those warnings? Looking into the quarto website one because that is not private material and it worked, so I'm going to inspect the test more closely

[acoffman]

@kweav The warnings about get_token are definitely coming from the tryCatch added in my PR. If you call get_token and you haven't authorized previously, you will get that warning printed. It's non-fatal but I didn't realize it would get printed in the output like that. I can see if there's a convenient way to suppress that in context.

[acoffman]

@kweav I pushed a commit to the original PR that hides the warning coming from get_token

[kweav]

Thanks @acoffman -- Warnings are gone now!

And I can confirm that ottrpal borrow chapter works for

• website and course
• qmd and Rmd
• outside jhudsl/fhdsl and within jhudsl

test 1: website, qmd, outside jhudsl/fhdsl:
https://kweav.github.io/quarto_borrow_chapter_test/
https://github.com/kweav/quarto_borrow_chapter_test/actions/runs/20272157667

test2: course, Rmd, within jhudsl:
https://jhudatascience.org/test_borrow_chapter/testing-borrow-chapter.html
https://github.com/jhudsl/test_borrow_chapter/actions/runs/20271671624

good to merge this and #19 @carriewright11?