Repositories list

• modelmap

  Public

  shimo-lab/modelmap’s past year of commit activity
  Embedding language models in probability space via log-likelihood vectors

  visualizationembeddingslanguage-model+ 5tsneinformation-geometryllmacl2025emnlp2025

  Jupyter Notebook

  •1•16•0•1•Updated Oct 25, 2025Oct 25, 2025

• Drug-Gene-Analogy

  Public

  shimo-lab/Drug-Gene-Analogy’s past year of commit activity
  Predicting drug–gene relations via analogy tasks with word embeddings (Scientific Reports 15, 17240 (2025))

  nlpbioinformaticsword-embeddings+ 2analogy-taskdrug-target-interactions

  Python

  •0•1•0•0•Updated Jul 2, 2025Jul 2, 2025

• Universal-Geometry-with-ICA

  Public

  shimo-lab/Universal-Geometry-with-ICA’s past year of commit activity
  Discovering Universal Geometry in Embeddings with ICA (Published in EMNLP 2023)

  embeddingspcaemnlp+ 8principal-component-analysiswhiteningcross-lingualinterpretabilityicaindependent-component-analysisemnlp2023+ 1

  Python

  •0•20•0•0•Updated Jun 17, 2025Jun 17, 2025

• consel

  Public
  CONSEL: for assessing the confidence of phylogenetic tree selection

  bootstrapsoftware

  C

  •4•6•2•1•Updated Dec 27, 2023Dec 27, 2023

• pvclust

  Public
  An R package for hierarchical clustering with p-values

  bootstrapsoftware

  R

  •6•48•0•0•Updated Dec 5, 2019Dec 5, 2019

• scaleboot

  Public
  bootstrapsoftware

  HTML

  •0•0•1•0•Updated Dec 4, 2019Dec 4, 2019

• eigenvectors-from-eigenvalues

  Public

  shimo-lab/eigenvectors-from-eigenvalues’s past year of commit activity
  Checking "Eigenvectors from Eigenvalues" (arXiv:1908.03795) by Peter B. Denton, Stephen J. Parke, Terence Tao, Xining Zhang

  HTML

  •0•2•0•0•Updated Nov 15, 2019Nov 15, 2019

• splr

  Public

  shimo-lab/splr’s past year of commit activity
  Python package to handle matrices written as the sum of a low rank and a sparse matrix (under development)

  python3sparse-matrixsingular-value-decomposition+ 1centering

  Python

  •0•2•0•0•Updated Oct 11, 2018Oct 11, 2018

• sembei

  Public
  🍘 単語分割を経由しない単語埋め込み 🍘

  nlpjapaneseword-embeddings+ 2softwarecomputational-linguistics

  Jupyter Notebook

  •4•14•0•0•Updated Mar 19, 2017Mar 19, 2017

• kadingir

  Public
  Implementations of spectral word embedding methods

  word-embeddingssoftwarecomputational-linguistics

  C++

  •2•1•0•0•Updated Aug 15, 2016Aug 15, 2016