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    43 repositories

    • contrast-agnostic-softseg-spinalcord

      Public
      Contrast-agnostic spinal cord segmentation project with softseg
      Python
      •
      MIT License
      •3•5•25•2•Updated Mar 6, 2025Mar 6, 2025

    • rootlets-informed-reg2template

      Public
      Spinal rootlets-informed registration to the template
      MIT License
      •0•1•4•0•Updated Mar 5, 2025Mar 5, 2025

    • csa-atrophy

      Public
      Evaluate the sensitivity of atrophy detection with SCT
      Python
      •
      MIT License
      •0•1•15•3•Updated Feb 28, 2025Feb 28, 2025

    • extend-seg-upper-cord

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

    • balgrist-sci

      Public
      Pipeline for processing SCI patients using SCT
      Python
      •
      MIT License
      •0•2•2•0•Updated Jan 30, 2025Jan 30, 2025

    • dcm-metric-normalization

      Public
      Python
      •
      MIT License
      •0•1•5•0•Updated Jan 23, 2025Jan 23, 2025

    • critical-ms-lesion

      Public
      Detection of critical MS lesion in the spinal cord
      GNU Lesser General Public License v2.1
      •0•0•4•1•Updated Nov 22, 2024Nov 22, 2024

    • fmri-segmentation

      Public
      Repository for the project on automatic spinal cord segmentation based on fMRI EPI data
      Python
      •
      MIT License
      •1•5•26•0•Updated Nov 22, 2024Nov 22, 2024

    • dcm-oklahoma

      Public
      Analysis of DCM structural MRI and qMRI of the spinal cord
      MIT License
      •0•1•0•0•Updated Jul 31, 2024Jul 31, 2024

    • STOP-MS-data

      Public
      Compute CSA on upper spinal cord on MPRAGE from large MS cohort from Karolinska Institute.
      Shell
      •
      MIT License
      •0•0•3•0•Updated Jul 26, 2024Jul 26, 2024

    • spine-park

      Public
      Pipeline for multicontrast analysis in PD patients
      Shell
      •
      MIT License
      •0•0•8•0•Updated Jul 9, 2024Jul 9, 2024

    • mri-linac-longitudinal-registration

      Public
      This project investigates the stability of spinal cord positioning across MRI-LINAC sessions
      MIT License
      •0•0•1•0•Updated Jun 29, 2024Jun 29, 2024

    • levin-stroke

      Public
      Repository for levin-stroke project.
      Shell
      •
      MIT License
      •0•0•1•0•Updated Jun 22, 2024Jun 22, 2024

    • bavaria-quebec

      Public
      Bavaria (TUM) and Quebec (Polytechnique) collaboration on a project on spinal cord MS lesion segmentation.
      Shell
      •
      MIT License
      •1•6•9•0•Updated May 2, 2024May 2, 2024

    • epi-ap-pa-registration

      Public
      FMRI AP-PA registration to quantify EPI distortion
      Jupyter Notebook
      •0•0•2•1•Updated Nov 6, 2023Nov 6, 2023

    • pmj-based-csa

      Public
      CSA measure based on distance from pontomedullary junction (PMJ)
      Python
      •
      MIT License
      •0•2•2•0•Updated Aug 23, 2023Aug 23, 2023

    • venus-integration

      Public
      Code to process data for integrating acquisition planning with VENUS
      Python
      •
      MIT License
      •0•0•0•0•Updated May 22, 2023May 22, 2023

    • ukbiobank-spinalcord-csa

      Public
      Measure of the averaged cross-sectional area (cord CSA) between C2 and C3 of the spinal cord with UK Biobank Brain MRI dataset.
      Python
      •
      MIT License
      •0•3•12•0•Updated Apr 25, 2023Apr 25, 2023

    • cord-erosion

      Public
      Pipeline to erode the spinal cord mask in order to quantify MS lesions from the subpial surface.
      Shell
      •0•2•2•1•Updated Dec 20, 2022Dec 20, 2022

    • normative-metrics

      Public
      Processing scripts for computation of qMRI metrics
      Python
      •
      MIT License
      •0•1•5•0•Updated Jul 16, 2022Jul 16, 2022

    • cervical_sc_study

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Apr 27, 2022Apr 27, 2022

    • gm-challenge-data

      Public
      Dataset for the gray matter acquisition challenge
      Creative Commons Zero v1.0 Universal
      •1•3•3•0•Updated Jan 25, 2022Jan 25, 2022

    • gm-challenge

      Public
      Spinal cord gray matter imaging challenge
      Python
      •
      MIT License
      •3•8•3•1•Updated Jan 25, 2022Jan 25, 2022

    • vertebral-labeling-validation

      Public
      Pipeline to validate the performance of new vertebral labeling methods.
      Python
      •0•1•1•0•Updated Oct 31, 2021Oct 31, 2021

    • pediatric-genova

      Public
      Image analysis pipeline for neonatal Spinal Cord MRI data from University of Genoa in collaboration with Gaslini Children's Hospital.
      pipelinespinal-corddkineonatal
      Shell
      •
      MIT License
      •1•1•0•0•Updated Oct 15, 2021Oct 15, 2021

    • template-pa78

      Public
      Repository with code to generate the PA78 template.
      MIT License
      •1•0•6•0•Updated Jul 26, 2021Jul 26, 2021

    • inspired

      Public
      Spinal cord analysis scripts based on SCT
      Shell
      •
      MIT License
      •2•2•4•1•Updated Dec 23, 2020Dec 23, 2020

    • exvivo-template

      Public
      Repository for generating high resolution ex-vivo MRI template.
      Python
      •0•0•1•0•Updated Aug 13, 2020Aug 13, 2020

    • tumor-segmentation

      Public
      Pipeline for the segmentation of spinal tumors
      Jupyter Notebook
      •0•1•1•1•Updated Jul 11, 2020Jul 11, 2020

    • manual-labeling

      Public
      Scripts to loop over multiple subjects and perform manual labeling for use in machine learning projects.
      MIT License
      •0•0•2•1•Updated May 27, 2020May 27, 2020
    43 repositories found. List is sorted by Last pushed in descending order.