Repositories list

• quinngroup.github.io

  Public
  Group landing page.

  HTML

  •

  MIT License

  •1•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• Mitochondrial-Dynamics-Mmar-A549

  Public
  0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• toxoplasma-3DTracking

  Public
  This repository is created for opensourcing the codes for OSBD workshop paper on IEEE Bigdata 2018

  Jupyter Notebook

  •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

• 3Dcell_tracking_DSAA2019

  Public
  This repository contains the codes for the paper we submitted to IEEE DSAA 2019 : "Lightweight and Scalable Particle Tracking and Motion Clustering of 3D Cell Trajectories"

  Python

  •1•1•0•0•Updated Nov 2, 2024Nov 2, 2024

• ornet-scipy2024

  Public
  Repository for "Identifying virulence determinants in pathogenic mycobacteria via host cell mitochondrial morphology" in SciPy 2024

  Python

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  Other

  •527•0•0•0•Updated May 22, 2024May 22, 2024

• ornet

  Public
  Organellar segmentation, tracking, and network modeling.

  Python

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  MIT License

  •4•3•14•3•Updated Jan 22, 2024Jan 22, 2024

• sscs-scipy2023

  Public
  SciPy 2023 paper repo for Self-Supervised Cilia Segmentation

  Python

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  Other

  •527•0•0•0•Updated May 26, 2023May 26, 2023

• Plasmodium

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 22, 2023Mar 22, 2023

• scipy_proceedings

  Public
  Tools used to generate the SciPy conference proceedings

  Python

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  Other

  •527•0•0•0•Updated Jul 10, 2022Jul 10, 2022

• parkinsons_multimodal

  Public archive
  Python

  •0•1•0•0•Updated Nov 30, 2021Nov 30, 2021

• ornet-reu-2021

  Public
  OrNet REU summer 2021.

  HTML

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  MIT License

  •0•0•4•0•Updated Aug 31, 2021Aug 31, 2021

• representation-notes

  Public
  A repo dedicated to notes/tutorials/papers regarding basic ML/DL and representation theory.

  MIT License

  •0•0•0•0•Updated Aug 30, 2021Aug 30, 2021

• academic-honesty

  Public
  Website for the Academic Honesty podcast.

  0•0•0•0•Updated Apr 23, 2021Apr 23, 2021

• CiliaRepresentation

  Public
  A modular generative pipeline for understanding cilia appearance and dynamics

  Python

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  MIT License

  •1•0•30•0•Updated Apr 2, 2021Apr 2, 2021

• ciliaweb-dashboard

  Public archive
  Dashboard for the CiliaWeb representation learning module.

  Python

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  MIT License

  •0•0•3•0•Updated Jul 21, 2020Jul 21, 2020

• dr1dl-Dask

  Public
  Dictionary Learning in Dask

  Jupyter Notebook

  •0•0•2•0•Updated Apr 28, 2020Apr 28, 2020

• cilia-metrics

  Public
  Scripts for computing metrics from ciliary motion.

  pythonsignal-processingnumpy+ 6fftpower-spectral-densityciliary-motionciliaciliary-beat-frequencycbf

  Jupyter Notebook

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  MIT License

  •0•1•5•0•Updated Feb 17, 2020Feb 17, 2020

• Generative-Models

  Public
  Generative Models

  Python

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  MIT License

  •2•3•10•0•Updated Feb 12, 2020Feb 12, 2020

• openscience-intro-oct2019

  Public
  Introduction to Open Science guest lecture for Dr. Ron Walcott.

  open-sourceopen-dataopen-access+ 5open-scienceopen-educationopen-methodsopen-reviewresponsible-research

  HTML

  •

  MIT License

  •0•0•0•0•Updated Oct 28, 2019Oct 28, 2019

• GCNeuro

  Public
  Python

  •5•1•0•0•Updated Jul 13, 2019Jul 13, 2019

• SciPy2019-demo

  Public
  Demo for Scipy 2019

  Python

  •0•0•0•0•Updated Jul 10, 2019Jul 10, 2019

• qrg-talks

  Public
  Materials and references for all QRG meetings.

  HTML

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  MIT License

  •0•0•0•0•Updated Jun 1, 2019Jun 1, 2019

• zebrafish_epilepsy_repository

  Public
  Data analysis of calcium imaging on models for epilepsy. Primarily with Python.

  Python

  •1•0•0•0•Updated Apr 21, 2019Apr 21, 2019

• openscience-intro-march2019

  Public
  Introduction to Open Science guest lectures for Dr. Suzanne Barbour.

  open-sourceopen-dataopen-access+ 4open-scienceopen-educationopen-methodsopen-review

  HTML

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  MIT License

  •0•0•0•0•Updated Mar 26, 2019Mar 26, 2019

• fergus-ssl

  Public
  Python implementation of the Rob Fergus semi-supervised learning algorithm.

  Jupyter Notebook

  •0•1•1•0•Updated Feb 19, 2019Feb 19, 2019

• quarks

  Public
  scripts and files related to posts to The Quarks' Medium blog

  XSLT

  •1•0•0•0•Updated Jan 5, 2019Jan 5, 2019

• addf_pomdp

  Public
  Toy implementation of the POMDP framework defined in the ADDF grant and technical report.

  Python

  •0•0•0•0•Updated Nov 2, 2018Nov 2, 2018

• open-science-2018

  Public
  Materials for Open Science guest lecture with Dr. Nicole Lazar.

  open-sourceopen-dataopen-science+ 2open-educationopen-methods

  HTML

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  MIT License

  •1•1•0•0•Updated Oct 29, 2018Oct 29, 2018

• ornet-reu-2018

  Public
  OrNet work part of summer 2018 REU.

  Jupyter Notebook

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  MIT License

  •0•0•8•0•Updated Jul 17, 2018Jul 17, 2018

• lstm-scipy2018

  Public
  TeX

  •0•0•0•0•Updated May 22, 2018May 22, 2018